Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq160 289 5e-73
seq1011 262 7e-65
>seq160
Length=70483
Score = 289 bits (320), Expect = 5e-73
Identities = 857/1284 (67%), Gaps = 63/1284 (5%)
Strand=Plus/Plus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||| ||||||||||| |||||||||||| |||||| || ||| | |||||||||||
Sbjct 48983 AGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAG-CTCACGAGCCTCGGGAGA 49041
Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|||||||| ||||| | | ||||| ||||||| || ||||| || || | |||
Sbjct 49042 CTCAAAGGGCATGCGCAG-AGCAAGGAAAG-CGTCGGCAAGACCCTGGACACCAACACCA 49099
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||| | | ||||| | |||| | || |||| || || || |||||| |
Sbjct 49100 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGGTTGACAT 49157
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653
| || | ||||| ||||| | ||| |||||||| || | |||| ||| |
Sbjct 49158 CAATGATCTTGTTAAGGTTGCG------GAC---AACCACCTTAGTAA-CTTCATGGAGC 49207
Query 221654 TTGAACACCAACTCG---CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710
|| | || ||| | ||| |||| | | || ||| |||| ||||| |
Sbjct 49208 TT---CTTAAAGTCGTAGCAGCCTTCGTTGTAG---TCGACATAAGCAGGGAGGGCCAAA 49261
Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTA 221767
||||||||| || || || |||||||| || || | |||| |||||||| ||
Sbjct 49262 GAGGCCAGGTTGCAAACAGCAACCTCGTC--TGG-GGCACAGTACTCGATGATCTCGGTG 49318
Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827
||||||||| || |||||| ||||||| || || || |||||| ||| ||
Sbjct 49319 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 49378
Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887
|||||||||||||| ||||| |||||||| ||| ||| ||| || | |||
Sbjct 49379 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCAC 49438
Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTA 221944
|| | |||| |||| | ||| | | | ||||| ||| || ||| | ||
Sbjct 49439 AGCT-TCTGAGCGCGAATGGTCTTGCGGCCACGTCCCTC---CTTCTCGTACTTCTCATA 49494
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
| ||| | | |||| || || || || | ||||| || || | ||| |||
Sbjct 49495 CAAAGCCT--CGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCAC 49552
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|| || |||||| | ||| | | || | || ||||||||| || || ||||| ||
Sbjct 49553 ATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGA 49612
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
|| | || | || | | || ||| ||| ||||| ||| || | ||||| |
Sbjct 49613 GCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGG 49672
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
|||||||| | |||||||||||| ||||| || |||| ||| | || || || ||||||
Sbjct 49673 AACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG 49732
Query 222185 TTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242
|| ||||||||||| | ||| ||| ||| | |||||| | ||||| | || | |
Sbjct 49733 TTACCACCCTGATCGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAA 49790
Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300
||||| || |||||||||||| |||||| | ||| ||| | || | | |
Sbjct 49791 TACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGGT 49847
Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359
|| | || |||||||||||| || || || |||||||| || |||| |||||||
Sbjct 49848 GGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGT 49907
Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419
| ||| ||||| || ||| ||||| | || | || || || || |||| ||| |
Sbjct 49908 CATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGG 49967
Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479
| | || || |||||| ||||| ||||| ||| || || ||| | |||||||
Sbjct 49968 CCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACA 50027
Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGT--TGTCCCCGTGAATCTGCATGGCGCA 222537
| || | ||| ||||| | ||| | | |||| | ||||| | | || | | |
Sbjct 50028 TGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATACCAACA-GACAC- 50085
Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595
|| |||| ||||| ||| || | ||| ||| || | |||| || |||||
Sbjct 50086 TCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGGTAT 50143
Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655
||| |||| ||||||||| || ||||| | | || ||||||| ||| || | |
Sbjct 50144 GATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATG 50203
Query 222656 GCGGCGTCCAGCTCCGACTTGTGC 222679
|||| ||| |||||| |||||||
Sbjct 50204 GCGGAGTCGAGCTCCTCCTTGTGC 50227
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 48688 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 48747
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || ||||||||||||||| ||||| | ||| ||||| || ||||| || || |
Sbjct 48748 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 48807
Query 221236 CAGCAGACTGTTGCGC 221251
|||| |||||||||
Sbjct 48808 GAGCAAGCTGTTGCGC 48823
>seq1011
Length=119094
Score = 262 bits (290), Expect = 7e-65
Identities = 574/856 (67%), Gaps = 22/856 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| |||| || || || | | |||||| || | || ||
Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 29073
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | |||| |||||||| ||||||||||| || || |||||||| ||| |||| |
Sbjct 29074 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 29133
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | | || || ||| | ||||| || |||||||| |||||||| ||
Sbjct 29134 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 29193
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
|| || | ||||| ||| || || ||| | || ||||| | || |
Sbjct 29194 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 29253
Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
| || | || | || || ||||| ||| ||| || |||| | ||||||
Sbjct 29254 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCG 29312
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
|||||||| ||||||||| | | ||| | || | |||| | |||| ||||| ||||
Sbjct 29313 ACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 29372
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951
|||| || || ||||| ||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 29373 TTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGA 29432
Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
|| || |||||| || ||| ||||||||||||||||||| | ||||||||||
Sbjct 29433 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTC 29492
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCA 26069
| |||| || |||||||||||||| || | ||| ||| | || | | | ||
Sbjct 29493 TGCACACTGACTTTGCCTGCCTGCTGCACTC---TCAC---CTCAAGAACCGTGCCAGCA 29546
Query 26070 AGAGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126
|| || || | || ||||||| || ||||| || ||| |||| ||
Sbjct 29547 AG-GA-GGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604
Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186
| ||||||||| || || |||| || ||||| ||
Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGA 29664
Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTA 26245
|| ||| ||||||| |||||| | || || || | ||||| ||| ||| |
Sbjct 29665 GTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCC-A 29723
Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305
|||| || ||||| ||||| ||||| || | | || ||||||||||||||||| |||
Sbjct 29724 ACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGC 29783
Query 26306 GGGTCGGCGACTATCA 26321
| |||| |||||| ||
Sbjct 29784 GTGTCGCCGACTACCA 29799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928832562469760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |