Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq160 289 5e-73 seq1011 262 7e-65 >seq160 Length=70483 Score = 289 bits (320), Expect = 5e-73 Identities = 857/1284 (67%), Gaps = 63/1284 (5%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| ||||||||||| |||||||||||| |||||| || ||| | ||||||||||| Sbjct 48983 AGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAG-CTCACGAGCCTCGGGAGA 49041 Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||||| ||||| | | ||||| ||||||| || ||||| || || | ||| Sbjct 49042 CTCAAAGGGCATGCGCAG-AGCAAGGAAAG-CGTCGGCAAGACCCTGGACACCAACACCA 49099 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | | ||||| | |||| | || |||| || || || |||||| | Sbjct 49100 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGGTTGACAT 49157 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653 | || | ||||| ||||| | ||| |||||||| || | |||| ||| | Sbjct 49158 CAATGATCTTGTTAAGGTTGCG------GAC---AACCACCTTAGTAA-CTTCATGGAGC 49207 Query 221654 TTGAACACCAACTCG---CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || | || ||| | ||| |||| | | || ||| |||| ||||| | Sbjct 49208 TT---CTTAAAGTCGTAGCAGCCTTCGTTGTAG---TCGACATAAGCAGGGAGGGCCAAA 49261 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTA 221767 ||||||||| || || || |||||||| || || | |||| |||||||| || Sbjct 49262 GAGGCCAGGTTGCAAACAGCAACCTCGTC--TGG-GGCACAGTACTCGATGATCTCGGTG 49318 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 ||||||||| || |||||| ||||||| || || || |||||| ||| || Sbjct 49319 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 49378 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||||||||| ||||| |||||||| ||| ||| ||| || | ||| Sbjct 49379 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCAC 49438 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTA 221944 || | |||| |||| | ||| | | | ||||| ||| || ||| | || Sbjct 49439 AGCT-TCTGAGCGCGAATGGTCTTGCGGCCACGTCCCTC---CTTCTCGTACTTCTCATA 49494 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 | ||| | | |||| || || || || | ||||| || || | ||| ||| Sbjct 49495 CAAAGCCT--CGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCAC 49552 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 || || |||||| | ||| | | || | || ||||||||| || || ||||| || Sbjct 49553 ATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGA 49612 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || | || | | || ||| ||| ||||| ||| || | ||||| | Sbjct 49613 GCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGG 49672 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | |||||||||||| ||||| || |||| ||| | || || || |||||| Sbjct 49673 AACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG 49732 Query 222185 TTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242 || ||||||||||| | ||| ||| ||| | |||||| | ||||| | || | | Sbjct 49733 TTACCACCCTGATCGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAA 49790 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300 ||||| || |||||||||||| |||||| | ||| ||| | || | | | Sbjct 49791 TACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGGT 49847 Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 || | || |||||||||||| || || || |||||||| || |||| ||||||| Sbjct 49848 GGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGT 49907 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| ||||| || ||| ||||| | || | || || || || |||| ||| | Sbjct 49908 CATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGG 49967 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | | || || |||||| ||||| ||||| ||| || || ||| | ||||||| Sbjct 49968 CCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACA 50027 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGT--TGTCCCCGTGAATCTGCATGGCGCA 222537 | || | ||| ||||| | ||| | | |||| | ||||| | | || | | | Sbjct 50028 TGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATACCAACA-GACAC- 50085 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 || |||| ||||| ||| || | ||| ||| || | |||| || ||||| Sbjct 50086 TCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGGTAT 50143 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| |||| ||||||||| || ||||| | | || ||||||| ||| || | | Sbjct 50144 GATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATG 50203 Query 222656 GCGGCGTCCAGCTCCGACTTGTGC 222679 |||| ||| |||||| ||||||| Sbjct 50204 GCGGAGTCGAGCTCCTCCTTGTGC 50227 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 48688 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 48747 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||| ||||| || ||||| || || | Sbjct 48748 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 48807 Query 221236 CAGCAGACTGTTGCGC 221251 |||| ||||||||| Sbjct 48808 GAGCAAGCTGTTGCGC 48823 >seq1011 Length=119094 Score = 262 bits (290), Expect = 7e-65 Identities = 574/856 (67%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 29073 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||||||||| || || |||||||| ||| |||| | Sbjct 29074 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 29133 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 29134 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 29193 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || | Sbjct 29194 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 29253 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || | || || ||||| ||| ||| || |||| | |||||| Sbjct 29254 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCG 29312 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||| ||||||||| | | ||| | || | |||| | |||| ||||| |||| Sbjct 29313 ACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 29372 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 |||| || || ||||| ||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 29373 TTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGA 29432 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || ||| ||||||||||||||||||| | |||||||||| Sbjct 29433 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTC 29492 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCA 26069 | |||| || |||||||||||||| || | ||| ||| | || | | | || Sbjct 29493 TGCACACTGACTTTGCCTGCCTGCTGCACTC---TCAC---CTCAAGAACCGTGCCAGCA 29546 Query 26070 AGAGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 || || || | || ||||||| || ||||| || ||| |||| || Sbjct 29547 AG-GA-GGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| || || |||| || ||||| || Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGA 29664 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTA 26245 || ||| ||||||| |||||| | || || || | ||||| ||| ||| | Sbjct 29665 GTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCC-A 29723 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||| ||||| ||||| || | | || ||||||||||||||||| ||| Sbjct 29724 ACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGC 29783 Query 26306 GGGTCGGCGACTATCA 26321 | |||| |||||| || Sbjct 29784 GTGTCGCCGACTACCA 29799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832562469760