Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq160 228 1e-54 seq1011 116 4e-21 >seq160 Length=70483 Score = 228 bits (252), Expect = 1e-54 Identities = 1050/1638 (64%), Gaps = 47/1638 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| ||||||| || | | || ||| || || |||||||| |||| Sbjct 50106 CCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGACATTGAGCGTGTC 50047 Query 75272 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 ||||||||||| || ||||| |||| | |||| || || | || ||||| | Sbjct 50046 CTGGAGACATACAACCTCATGTCTAGCAAG--TTCTTCACCCATGCCTCCCCCACCCTGT 49989 Query 75330 TCAATGCTGGTACACC-AAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| || ||||| || || || ||| ||||| |||||| | ||| || ||||| Sbjct 49988 TCAACGCCGGTACCCCGCAGGCC-CAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGAT 49930 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | |||||||||| ||||| | | |||||| || || ||| |||| Sbjct 49929 GACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCT 49870 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || ||||| || || || |||| | | |||| ||| ||| || || Sbjct 49869 GGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACC 49810 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| || | ||||||||||| |||||||| || || ||| ||| || | ||| Sbjct 49809 AACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATAT 49750 Query 75569 GTAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || |||| ||| || |||| || || | || ||||| | || || ||| Sbjct 49749 GTCGATCA---GGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGG 49693 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || || || | ||||||||||| | || ||||| || | ||||||| || Sbjct 49692 CACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGC 49633 Query 75683 TGTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG-- 75739 | | || || || | | | || |||||||| || || ||||||||||| |||||| Sbjct 49632 GCTCGTGA-CTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 49574 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGG 75797 || ||| | ||| | || | || || || || || || || || | ||| || Sbjct 49573 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTA 49517 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGA 75857 | || |||||||| || || | || ||||| || ||||||| | | | || Sbjct 49516 T-GGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAAGA 49458 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | | | | || | | ||| | | || | | | ||||| |||||||| | Sbjct 49457 CCATTCGCG-CTCAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAAC 49399 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | ||||| ||||||||||| || ||| ||||| ||||| ||||| ||||||| Sbjct 49398 CCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 49339 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || || ||||| || || | |||||| | || ||| ||| Sbjct 49338 ATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGCT 49279 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 |||||||| |||| || | ||||| || |||||| | | | || | Sbjct 49278 GTTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGTCGACTACAACGAAGGCTGCTAC 49219 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | | || || |||||| | || ||| | ||| | || || ||| ||||| Sbjct 49218 GACTTTAAGAAGCTCCATGAAGTTACTAAGGTGGTTGTCCGCAACCTTAACAAGATCATT 49159 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATT 76216 || || || || || || || || || || ||||| ||| |||| ||| Sbjct 49158 GATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCCATT 49099 Query 76217 GGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGATTC 76275 ||| | ||||| || ||||| || || | || || | || ||| | ||||| || Sbjct 49098 GGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTG-CGCATGCCCTTTGAGTC 49040 Query 76276 AGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGA 76335 || || ||| |||| | |||||||| || || || ||||| |||| || Sbjct 49039 TCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCTAGA 48980 Query 76336 GGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGC 76395 ||| | || | || | | | ||| ||||||| |||| |||| || || || Sbjct 48979 GGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTATGAATCATTCAAGGGATCACCTGC 48920 Query 76396 GTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGAC 76453 ||| | || | || || || || ||||||| | || || || || | | | || Sbjct 48919 ATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAGCC-CTCTGACCTGTGGGAG 48862 Query 76454 TGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 76513 ||||| |||||||| | ||||||||| | ||| || ||||| | | | || Sbjct 48861 TGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGCC 48802 Query 76514 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATAC 76573 || |||||||| ||| || | || || |||| || || || ||||| || || ||| Sbjct 48801 CCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTAC 48742 Query 76574 ACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 || | |||||||||| | || | ||| || || ||||| |||||||| Sbjct 48741 ACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAACCCCTGG 48682 Query 76634 CTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA-T 76689 || |||| ||||| | | || ||||||||| | | |||||| | | ||| | Sbjct 48681 CTTCTCAAGGACCTGGTCGACACCGGCCTCTGGTCCGATGCCATGAAGAACCGTATCATT 48622 Query 76690 GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCT 76749 | ||| | | || |||||||| || ||| | | ||||| || ||||||||| || Sbjct 48621 GCTGAGAAC----GGCTCCATTCAGAACATCCCCAACATCCCCGAAGATATCAAGGCCCT 48566 Query 76750 CTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGATCG 76806 ||| || || ||||| || || || |||| | ||||| || ||||| Sbjct 48565 TTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGGCGGCTGATCG 48509 Query 76807 TGGTCGCTTCATTGATCA 76824 |||| ||||||||||| Sbjct 48508 TGGTGCTTTCATTGATCA 48491 >seq1011 Length=119094 Score = 116 bits (128), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 17/526 (3%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| ||||| ||||||| ||||| |||||||||| | || |||| Sbjct 28991 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 29050 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 29051 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 29110 Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | | || |||| || || ||||| ||| || || | Sbjct 29111 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATG 29169 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 29170 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 29228 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAA-GAAGC-AGTTATTTGAAGCCATCCAAAC 65006 | |||| ||||| ||||| || | | | | ||| | | || | ||||| | || Sbjct 29229 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 29286 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTC 65063 | || || ||| |||||||| | ||||| || || ||| | |||| || || Sbjct 29287 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 29346 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 | ||||| ||| ||||||| |||| ||||| || ||||||||||||||| ||| Sbjct 29347 T---TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGG 29403 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 | || | | || | ||| | |||||||| ||||||||||| || || ||| || Sbjct 29404 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTC 29463 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || || || |||||||| ||| || |||||| Sbjct 29464 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 29509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561740195520