Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq74 230 3e-55
seq378 196 6e-45
seq434 181 1e-40
seq98 150 2e-31
seq269 96.9 5e-15
>seq74
Length=105533
Score = 230 bits (254), Expect = 3e-55
Identities = 468/687 (68%), Gaps = 11/687 (2%)
Strand=Plus/Minus
Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363
|||||||| | || ||||| ||||| || || ||| | | | | || || ||| ||
Sbjct 27992 GGTATCGACCTGGGTACTACGTACTCCTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 27934
Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423
|| ||| | || ||||| || ||||| || || || |||| ||||||||| || || |
Sbjct 27933 TATCATCGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 27874
Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483
|| ||||| | || ||||| || || || ||| || |||||||| || || ||
Sbjct 27873 CGAGCGTCTGATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 27814
Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543
||| ||||| ||||| | ||||| ||||||||| | || | ||||| | || ||
Sbjct 27813 CTTCGACGCCAAGCGATTGATTGGACGCAAGTTTGCCGACTCCGAGGTCCAGGCTGACAT 27754
Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603
||| ||| | | | ||| | || | |||| ||||| | | | || ||
Sbjct 27753 GAAGCACTTCCCCT-TCAAGATCGTCGACAAG-GGCTCC-AAGCCCGTCGTCGAGGTCGA 27697
Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663
|| | || |||||||| || | ||||| || || || || ||| | ||| ||
Sbjct 27696 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 27637
Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723
|||| ||||| || || || | | | || | || || || | || || | |||||
Sbjct 27636 GATGCGTGAGACCGCCGAGTCCTACCTCGGAACCACCGTCAACAACGCCGTCATCACTGT 27577
Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783
|| || ||||||| || || || ||||| || |||||||| | | ||||| ||
Sbjct 27576 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGG 27517
Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843
||| ||| || | || ||||| || || || || ||||| || || || || || ||
Sbjct 27516 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGCCTTGA 27457
Query 195844 CAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900
|||||| || ||| | | | || || | ||||| ||||||||||||||||| ||
Sbjct 27456 CAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCTT 27400
Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960
|||||||| || || | ||||| | ||||| ||||| || ||| | ||||| |||||
Sbjct 27399 CGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 27340
Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| | |||||||||||||||||
Sbjct 27339 CACTCACTTGGGTGGTGAAGATTTCGA 27313
>seq378
Length=193057
Score = 196 bits (216), Expect = 6e-45
Identities = 173/216 (80%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || ||||| |||||||| || |||||||||||||| ||||| || || || |||||
Sbjct 156197 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 156256
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
||| |||| ||||||| || |||||||| || || || || || ||||| ||||| ||
Sbjct 156257 AACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGATC 156316
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
|| |||||||| |||||||| ||||| || |||||| | || |||||| | || ||||||
Sbjct 156317 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 156376
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|||||||| |||||||| || | || || ||||||
Sbjct 156377 TCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 156412
Score = 170 bits (188), Expect = 3e-37
Identities = 177/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||| || || || || || || || || || |||||||||||||| || |
Sbjct 156636 GTGGTATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAAT 156695
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||| ||| |||| |||||||||| || ||||| |||||||| || |
Sbjct 156696 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTG 156755
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || | || ||||||||||| ||||| ||||| || || ||| | || |
Sbjct 156756 ACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACT 156815
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||| |||| |||||| || || ||| | ||||| | ||||| |||||
Sbjct 156816 ACAACATTCAGAAGGAGAGCACACTGCACTTGGTTCTGCGTCTTCGTGGTGG 156867
Score = 168 bits (186), Expect = 9e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || || ||||| || || || || |||||||||||||| ||||| ||
Sbjct 155899 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 155958
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || ||||| || | || ||||||| || || ||||| |||||||| || || |||
Sbjct 155959 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 156018
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || ||||| ||||| || || || || ||||| || || || | || ||||||
Sbjct 156019 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 156078
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | ||||| ||||||
Sbjct 156079 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGGT 156126
Score = 163 bits (180), Expect = 4e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || | || || || || ||||| | |||||||| |
Sbjct 156408 GTGGTATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAAT 156467
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| |||||||| ||||| || |||| | |||||||| || ||||| || ||||| || |
Sbjct 156468 CATCAGACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCTCCGG 156527
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
||||||| || ||||| ||||||||||| |||||||| || || || || | || |
Sbjct 156528 ATCAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACT 156587
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| |||| |||||| || || |||||||| || | ||||| ||||||
Sbjct 156588 ACAACATTCAGAAGGAGAGCACACTTCACCTTGTCCTCCGCCTTCGTGGTGGT 156640
>seq434
Length=177494
Score = 181 bits (200), Expect = 1e-40
Identities = 178/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || || || || ||||| || || || || |||||||| ||||| ||||| ||
Sbjct 69512 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 69453
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| |||||||| || || |||
Sbjct 69452 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 69393
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| ||| | || || |||||||| ||||| || ||||| || |||||| | || ||||||
Sbjct 69392 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 69333
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
| || ||||||||||| || ||||| || || | || || ||||||||
Sbjct 69332 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 69283
>seq98
Length=95448
Score = 150 bits (166), Expect = 2e-31
Identities = 475/725 (66%), Gaps = 21/725 (3%)
Strand=Plus/Plus
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
||||| ||||| ||||||| || || || ||||| || ||||| |||| ||| |||
Sbjct 72869 ACTGTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATT 72928
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
|| || || ||| || | || ||||| || || || || ||||| || || || |||
Sbjct 72929 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCTATCGCCTACGGT 72988
Query 195839 CTGGA--CAAG-AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|||| | | || | ||| | || || || |||||| ||||| |||||||||
Sbjct 72989 CTGGGTGCTGGTAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTTGGTGGTGGT 73048
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| || |||||||| || ||||| || | |||||| | ||| || |||||||| |||
Sbjct 73049 ACTTTCGATGTCTCCCTGCTCAACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACCGCT 73108
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-A 196014
||||| || || | ||||| | || || || | | | | | | | || | |
Sbjct 73109 GGTGACACCCACTTGGGTGGCCAGGACTTTGACAC-CAACCTGTTGGACCACTGCAAGAA 73167
Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGG 196072
|||||| ||| |||| ||||| | | | | || | || | ||||| || |
Sbjct 73168 GGAGTTCACTCGCAAGAGCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTCCGAAGA 73225
Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGG 196130
|| | ||||| || || |||||||| || || ||||| | || || || | |
Sbjct 73226 CTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCA 73283
Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190
|||||||||| || | || || || || ||| | || || |||||||| ||||
Sbjct 73284 TTGAGATTGACTCTCTCTTCGAGGGTGAGGATTTCACCATGACCATCACCCGTGCTCGTT 73343
Query 196191 TTGAAGAGTTAAACTCTGA----TTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246
| || ||| | ||| | | |||| | || | | | || ||||||| || ||
Sbjct 73344 TCGAGGAGCTCAACGCCAAGGCCTTTGCT--GGCA--CTCTCGAGCCTGTTGCCCAGGTC 73399
Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306
|| || || || || ||| || || || |||||||| || || || ||
Sbjct 73400 CTCAAGGATGCCGCTATCGACAAGAGCGCTGTCGAGGAGATTGTCCTGGTCGGTGGTTCT 73459
Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366
|||||||| || ||||| || || | || || |||||| | || | | |
Sbjct 73460 ACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAG 73519
Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426
|| | |||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| |||
Sbjct 73520 AAGAGCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTC 73579
Query 196427 TCAGG 196431
|| ||
Sbjct 73580 TCCGG 73584
>seq269
Length=41700
Score = 96.9 bits (106), Expect = 5e-15
Identities = 169/242 (70%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805
||||| || || || |||||||| | | ||||| ||| | ||| || |||| ||
Sbjct 16373 CAACGTCAAGCCACCAAGGACGCCGGTATCATTGCCGGTTTGAACGTCCTCCGAATCGTC 16432
Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865
|| || || || || || || ||||| || |||||||| |||| | | ||| | |
Sbjct 16433 AACGAGCCCACCGCCGCCGCTATTGCCTACGGTCTGGATAAGACTGATGGCGA-GCGCCA 16491
Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925
|| |||| ||| ||||||||||||||||| |||||||| || || || || ||
Sbjct 16492 GATC-ATTG-TCTACGATCTCGGTGGTGGTACTTTTGATGTTTCTCTCCTGTCCATCGAC 16549
Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985
||| | ||||| || |||||| || ||||| || || || |||||||| || ||
Sbjct 16550 AACGGTGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 16609
Query 195986 GA 195987
||
Sbjct 16610 GA 16611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657853732662880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |