Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq74 230 3e-55 seq378 196 6e-45 seq434 181 1e-40 seq98 150 2e-31 seq269 96.9 5e-15 >seq74 Length=105533 Score = 230 bits (254), Expect = 3e-55 Identities = 468/687 (68%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 27992 GGTATCGACCTGGGTACTACGTACTCCTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 27934 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 27933 TATCATCGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 27874 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| | || ||||| || || || ||| || |||||||| || || || Sbjct 27873 CGAGCGTCTGATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 27814 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | ||||| ||||||||| | || | ||||| | || || Sbjct 27813 CTTCGACGCCAAGCGATTGATTGGACGCAAGTTTGCCGACTCCGAGGTCCAGGCTGACAT 27754 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 27753 GAAGCACTTCCCCT-TCAAGATCGTCGACAAG-GGCTCC-AAGCCCGTCGTCGAGGTCGA 27697 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| || | ||||| || || || || ||| | ||| || Sbjct 27696 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 27637 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || || | | | || | || || || | || || | ||||| Sbjct 27636 GATGCGTGAGACCGCCGAGTCCTACCTCGGAACCACCGTCAACAACGCCGTCATCACTGT 27577 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 27576 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGG 27517 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| || || || || || || Sbjct 27516 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGCCTTGA 27457 Query 195844 CAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||| || ||| | | | || || | ||||| ||||||||||||||||| || Sbjct 27456 CAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCTT 27400 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| Sbjct 27399 CGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 27340 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| | ||||||||||||||||| Sbjct 27339 CACTCACTTGGGTGGTGAAGATTTCGA 27313 >seq378 Length=193057 Score = 196 bits (216), Expect = 6e-45 Identities = 173/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| |||||||| || |||||||||||||| ||||| || || || ||||| Sbjct 156197 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 156256 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || |||||||| || || || || || ||||| ||||| || Sbjct 156257 AACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGATC 156316 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || |||||||| |||||||| ||||| || |||||| | || |||||| | || |||||| Sbjct 156317 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 156376 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||||||| |||||||| || | || || |||||| Sbjct 156377 TCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 156412 Score = 170 bits (188), Expect = 3e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| || || || || || || || || || |||||||||||||| || | Sbjct 156636 GTGGTATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAAT 156695 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || ||||| |||||||| || | Sbjct 156696 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTG 156755 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || ||||||||||| ||||| ||||| || || ||| | || | Sbjct 156756 ACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACT 156815 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| |||| |||||| || || ||| | ||||| | ||||| ||||| Sbjct 156816 ACAACATTCAGAAGGAGAGCACACTGCACTTGGTTCTGCGTCTTCGTGGTGG 156867 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 155899 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 155958 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||||| || || ||||| |||||||| || || ||| Sbjct 155959 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 156018 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || || || || ||||| || || || | || |||||| Sbjct 156019 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 156078 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | ||||| |||||| Sbjct 156079 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGGT 156126 Score = 163 bits (180), Expect = 4e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | || || || || ||||| | |||||||| | Sbjct 156408 GTGGTATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAAT 156467 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| ||||| || |||| | |||||||| || ||||| || ||||| || | Sbjct 156468 CATCAGACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCTCCGG 156527 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || ||||| ||||||||||| |||||||| || || || || | || | Sbjct 156528 ATCAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACT 156587 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||| || || |||||||| || | ||||| |||||| Sbjct 156588 ACAACATTCAGAAGGAGAGCACACTTCACCTTGTCCTCCGCCTTCGTGGTGGT 156640 >seq434 Length=177494 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 69512 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 69453 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 69452 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 69393 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || |||||||| ||||| || ||||| || |||||| | || |||||| Sbjct 69392 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 69333 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || ||||| || || | || || |||||||| Sbjct 69332 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 69283 >seq98 Length=95448 Score = 150 bits (166), Expect = 2e-31 Identities = 475/725 (66%), Gaps = 21/725 (3%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| ||||||| || || || ||||| || ||||| |||| ||| ||| Sbjct 72869 ACTGTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATT 72928 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | || ||||| || || || || ||||| || || || ||| Sbjct 72929 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCTATCGCCTACGGT 72988 Query 195839 CTGGA--CAAG-AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| | | || | ||| | || || || |||||| ||||| ||||||||| Sbjct 72989 CTGGGTGCTGGTAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTTGGTGGTGGT 73048 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | |||||| | ||| || |||||||| ||| Sbjct 73049 ACTTTCGATGTCTCCCTGCTCAACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACCGCT 73108 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-A 196014 ||||| || || | ||||| | || || || | | | | | | | || | | Sbjct 73109 GGTGACACCCACTTGGGTGGCCAGGACTTTGACAC-CAACCTGTTGGACCACTGCAAGAA 73167 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGG 196072 |||||| ||| |||| ||||| | | | | || | || | ||||| || | Sbjct 73168 GGAGTTCACTCGCAAGAGCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTCCGAAGA 73225 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGG 196130 || | ||||| || || |||||||| || || ||||| | || || || | | Sbjct 73226 CTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCA 73283 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||||||||| || | || || || || ||| | || || |||||||| |||| Sbjct 73284 TTGAGATTGACTCTCTCTTCGAGGGTGAGGATTTCACCATGACCATCACCCGTGCTCGTT 73343 Query 196191 TTGAAGAGTTAAACTCTGA----TTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246 | || ||| | ||| | | |||| | || | | | || ||||||| || || Sbjct 73344 TCGAGGAGCTCAACGCCAAGGCCTTTGCT--GGCA--CTCTCGAGCCTGTTGCCCAGGTC 73399 Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || || || || || ||| || || || |||||||| || || || || Sbjct 73400 CTCAAGGATGCCGCTATCGACAAGAGCGCTGTCGAGGAGATTGTCCTGGTCGGTGGTTCT 73459 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 |||||||| || ||||| || || | || || |||||| | || | | | Sbjct 73460 ACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAG 73519 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 || | |||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| ||| Sbjct 73520 AAGAGCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTC 73579 Query 196427 TCAGG 196431 || || Sbjct 73580 TCCGG 73584 >seq269 Length=41700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 169/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| || || || |||||||| | | ||||| ||| | ||| || |||| || Sbjct 16373 CAACGTCAAGCCACCAAGGACGCCGGTATCATTGCCGGTTTGAACGTCCTCCGAATCGTC 16432 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || ||||| || |||||||| |||| | | ||| | | Sbjct 16433 AACGAGCCCACCGCCGCCGCTATTGCCTACGGTCTGGATAAGACTGATGGCGA-GCGCCA 16491 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||||||||||||||| |||||||| || || || || || Sbjct 16492 GATC-ATTG-TCTACGATCTCGGTGGTGGTACTTTTGATGTTTCTCTCCTGTCCATCGAC 16549 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 16550 AACGGTGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 16609 Query 195986 GA 195987 || Sbjct 16610 GA 16611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657853732662880