Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq98 140 1e-27 seq1011 134 4e-26 seq301 87.8 5e-12 >seq98 Length=95448 Score = 140 bits (154), Expect = 1e-27 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| ||||| | |||||||||||||||| || ||| || || || Sbjct 26238 TCTTCCAGAGCCTTGACCAAACGTCTCTGAATATAACCAGTTTCAGCTGTCTTGACGGCA 26297 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | || ||| || Sbjct 26298 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGAGGGTGTCAGA 26357 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | || |||||||||| ||||| || ||||| || | || |||||| Sbjct 26358 CCACGGAGGTAAGAATTCTCAACGAAGCCACGAGCTTCGGGTGAGTAATCATCCTTGGTG 26417 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || | | ||| |||| ||||||||||| ||||| ||||| Sbjct 26418 AAATGCGGGAGAGTTCGGTATTTGAAACCGAATGGAATACGCTTTCCTTCAACAATCTGC 26477 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | || ||||||| ||||| || Sbjct 26478 TGTCCGACAAGCGCCGTCATCTGAGAAATGTT 26509 >seq1011 Length=119094 Score = 134 bits (148), Expect = 4e-26 Identities = 246/355 (69%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 29157 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 29216 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || || |||||||| || | | |||| ||| | | || |||||| Sbjct 29217 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 29275 Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 29276 GCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 29334 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||| | || ||||| || || Sbjct 29335 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTT 29394 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| || Sbjct 29395 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 29454 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || ||||| || |||||| Sbjct 29455 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 29509 >seq301 Length=211668 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| ||||| || || || |||||||||||||| || | | Sbjct 152543 TGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 152484 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || || ||| | |||||||| |||||||| Sbjct 152483 CCTTCTCTTGTGAAGGGCATGTCCTCTT-GTCGGTAAGTAACACCAATAGTGCCCTTTTG 152425 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 152424 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 152395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797724023198