Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq98 140 1e-27
seq1011 134 4e-26
seq301 87.8 5e-12
>seq98
Length=95448
Score = 140 bits (154), Expect = 1e-27
Identities = 194/272 (71%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| ||||| | |||||||||||||||| || ||| || || ||
Sbjct 26238 TCTTCCAGAGCCTTGACCAAACGTCTCTGAATATAACCAGTTTCAGCTGTCTTGACGGCA 26297
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| |||||||| |||| || |||||||| | || ||| ||
Sbjct 26298 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGAGGGTGTCAGA 26357
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | || |||||||||| ||||| || ||||| || | || ||||||
Sbjct 26358 CCACGGAGGTAAGAATTCTCAACGAAGCCACGAGCTTCGGGTGAGTAATCATCCTTGGTG 26417
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || || || || | || | | ||| |||| ||||||||||| ||||| |||||
Sbjct 26418 AAATGCGGGAGAGTTCGGTATTTGAAACCGAATGGAATACGCTTTCCTTCAACAATCTGC 26477
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||||| | || ||||||| ||||| ||
Sbjct 26478 TGTCCGACAAGCGCCGTCATCTGAGAAATGTT 26509
>seq1011
Length=119094
Score = 134 bits (148), Expect = 4e-26
Identities = 246/355 (69%), Gaps = 4/355 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || || ||| || || | ||||| |||||| || ||||| || || |
Sbjct 29157 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 29216
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423
| || || || || || |||||||| || | | |||| ||| | | || ||||||
Sbjct 29217 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 29275
Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||||||| ||| ||||| | |||||||| || || ||||||||
Sbjct 29276 GCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 29334
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| | ||||| || || ||||| ||||| | || ||||| || ||
Sbjct 29335 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTT 29394
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| ||
Sbjct 29395 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 29454
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| ||||| || || || | ||||||| || ||||| || ||||||
Sbjct 29455 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 29509
>seq301
Length=211668
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| ||||| |||||||| ||||| || || || |||||||||||||| || | |
Sbjct 152543 TGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 152484
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || ||||||||||| |||| || || ||| | |||||||| ||||||||
Sbjct 152483 CCTTCTCTTGTGAAGGGCATGTCCTCTT-GTCGGTAAGTAACACCAATAGTGCCCTTTTG 152425
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||| |||||| || |||||
Sbjct 152424 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 152395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471797724023198
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |