Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq834 156 5e-32 seq1011 138 1e-26 seq160 123 3e-22 seq589 107 2e-17 >seq834 Length=132354 Score = 156 bits (172), Expect = 5e-32 Identities = 233/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 18164 CCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCA 18223 |||| |||||||||||||| ||| | | || ||||| || |||||| | | | ||| Sbjct 71563 CCGAAGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCTCCATCACCA 71622 Query 18224 CGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGC 18283 |||| || ||||| || ||||||| |||||| || ||||| || |||||||||| | Sbjct 71623 CGCCCCGAAACGAAAAGGACCGCGTCACCATCCACTCCGGCACCGAAGACGGCCTCACTC 71682 Query 18284 TCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCG 18343 ||||| | || || |||| || ||||| || ||||| ||| ||||| | Sbjct 71683 TCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGATCAGCGCCCCAAGGACTACGGCA 71742 Query 18344 ACATGTGCAAGGTGC------CGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGT 18397 || | || | | | || ||| |||||||||| |||||| | | |||| Sbjct 71743 ACCAGACCATCGACCTCTACCCCCGTCCCAGCCACGCCGACTGGACCTACCTCGAAAAGT 71802 Query 18398 ACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCG 18457 ||||||||||||| || || ||||| ||||| ||| ||||||||| | || | Sbjct 71803 ACGGCATCAAGGCCTCCTCCGGCGGCGGCCGCAGCAGTGCGCGCGAGACCATTGCCCGTG 71862 Query 18458 TCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488 | ||||||||||| ||||||||||| ||||| Sbjct 71863 TGGCCGCCGGCGCCGTCGCCGAGAAGTGGCT 71893 >seq1011 Length=119094 Score = 138 bits (152), Expect = 1e-26 Identities = 230/321 (72%), Gaps = 21/321 (7%) Strand=Plus/Minus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| | Sbjct 29516 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAA 29461 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268 |||| || || |||||||| || |||||||||||||| ||||||| | | || || | Sbjct 29460 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAG--GCAAAGGCAC 29403 Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 || ||| ||||| |||||||||||||||||| | | || |||| ||||||| | || Sbjct 29402 CGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 29345 Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384 | | |||| | ||||||||| || |||||||||||||| || | | | || | Sbjct 29344 G----TTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAA 29289 Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442 || || |||||| ||||||| | | | | ||| | ||||||| |||||||| Sbjct 29288 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 29231 Query 869443 GATCAGGAGCGAATAGGTCTC 869463 ||| || || || |||||||| Sbjct 29230 GATGAGCAGGGAGTAGGTCTC 29210 Score = 113 bits (124), Expect = 6e-19 Identities = 222/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| |||| || || Sbjct 29805 GCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATG 29746 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| ||| ||||| | | Sbjct 29745 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGAGAGCGACA 29686 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| |||||||| ||||||||||||||||| ||| ||| || ||||||||||| Sbjct 29685 AGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 29626 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| || || | ||| || ||| || ||| |||| Sbjct 29625 AGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGATG 29566 Query 868931 ATCTGCCTGGGCACGTC--GGCCG--AGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | | | ||| || || | | || || |||| | | | || |||||||| Sbjct 29565 ATGTCACGGATCACCTCCTTGCTGGCACGG-TTCTTGAGGTG---AGAGTGCAGCAGGCA 29510 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||||| ||||| Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCT 29487 >seq160 Length=70483 Score = 123 bits (136), Expect = 3e-22 Identities = 215/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || | || |||| ||| || || || |||||||| | | ||||| || Sbjct 49741 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 49800 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | ||| || ||||| Sbjct 49801 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 49860 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| |||||| || | || ||| || || ||||| ||||| ||||| Sbjct 49861 GATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 49920 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | ||||| || || || | |||| || || Sbjct 49921 GATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 49980 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || ||||| | || |||||| |||| | |||||| || ||| || Sbjct 49981 GGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGT 50040 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 50041 CTCCAGGACACGC 50053 >seq589 Length=154327 Score = 107 bits (118), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | |||| ||| || || ||||| || | ||| | || |||||| | ||||| ||| Sbjct 142624 GCCTCAAACTTCCTTGATATTAAGCCGCTCTTGGATGTGGGCTGCAAGACCGTGGCGAAC 142683 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct 142684 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 142732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107052703824118