Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq834 156 5e-32
seq1011 138 1e-26
seq160 123 3e-22
seq589 107 2e-17
>seq834
Length=132354
Score = 156 bits (172), Expect = 5e-32
Identities = 233/331 (70%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 18164 CCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCA 18223
|||| |||||||||||||| ||| | | || ||||| || |||||| | | | |||
Sbjct 71563 CCGAAGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCTCCATCACCA 71622
Query 18224 CGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGC 18283
|||| || ||||| || ||||||| |||||| || ||||| || |||||||||| |
Sbjct 71623 CGCCCCGAAACGAAAAGGACCGCGTCACCATCCACTCCGGCACCGAAGACGGCCTCACTC 71682
Query 18284 TCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCG 18343
||||| | || || |||| || ||||| || ||||| ||| ||||| |
Sbjct 71683 TCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGATCAGCGCCCCAAGGACTACGGCA 71742
Query 18344 ACATGTGCAAGGTGC------CGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGT 18397
|| | || | | | || ||| |||||||||| |||||| | | ||||
Sbjct 71743 ACCAGACCATCGACCTCTACCCCCGTCCCAGCCACGCCGACTGGACCTACCTCGAAAAGT 71802
Query 18398 ACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCG 18457
||||||||||||| || || ||||| ||||| ||| ||||||||| | || |
Sbjct 71803 ACGGCATCAAGGCCTCCTCCGGCGGCGGCCGCAGCAGTGCGCGCGAGACCATTGCCCGTG 71862
Query 18458 TCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488
| ||||||||||| ||||||||||| |||||
Sbjct 71863 TGGCCGCCGGCGCCGTCGCCGAGAAGTGGCT 71893
>seq1011
Length=119094
Score = 138 bits (152), Expect = 1e-26
Identities = 230/321 (72%), Gaps = 21/321 (7%)
Strand=Plus/Minus
Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209
||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| |
Sbjct 29516 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAA 29461
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268
|||| || || |||||||| || |||||||||||||| ||||||| | | || || |
Sbjct 29460 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAG--GCAAAGGCAC 29403
Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327
|| ||| ||||| |||||||||||||||||| | | || |||| ||||||| | ||
Sbjct 29402 CGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 29345
Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384
| | |||| | ||||||||| || |||||||||||||| || | | | || |
Sbjct 29344 G----TTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAA 29289
Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442
|| || |||||| ||||||| | | | | ||| | ||||||| ||||||||
Sbjct 29288 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 29231
Query 869443 GATCAGGAGCGAATAGGTCTC 869463
||| || || || ||||||||
Sbjct 29230 GATGAGCAGGGAGTAGGTCTC 29210
Score = 113 bits (124), Expect = 6e-19
Identities = 222/323 (69%), Gaps = 9/323 (3%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| |||| || ||
Sbjct 29805 GCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAAATG 29746
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | ||||||| ||| ||| ||||| | |
Sbjct 29745 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGAGAGCGACA 29686
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| |||||||| ||||||||||||||||| ||| ||| || |||||||||||
Sbjct 29685 AGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 29626
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| || || | ||| || ||| || ||| ||||
Sbjct 29625 AGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCGGTGATG 29566
Query 868931 ATCTGCCTGGGCACGTC--GGCCG--AGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986
|| | | | ||| || || | | || || |||| | | | || ||||||||
Sbjct 29565 ATGTCACGGATCACCTCCTTGCTGGCACGG-TTCTTGAGGTG---AGAGTGCAGCAGGCA 29510
Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008
||||||||| ||||| |||||
Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCT 29487
>seq160
Length=70483
Score = 123 bits (136), Expect = 3e-22
Identities = 215/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| ||||| || | || |||| ||| || || || |||||||| | | ||||| ||
Sbjct 49741 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 49800
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | ||||| ||| || | ||| || |||||
Sbjct 49801 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 49860
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| |||||| || | || ||| || || ||||| ||||| |||||
Sbjct 49861 GATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 49920
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || | ||||| || || || | |||| || ||
Sbjct 49921 GATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 49980
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| || ||||| | || |||||| |||| | |||||| || ||| ||
Sbjct 49981 GGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGT 50040
Query 1630365 GGCGAGCACGCGC 1630377
| || || |||
Sbjct 50041 CTCCAGGACACGC 50053
>seq589
Length=154327
Score = 107 bits (118), Expect = 2e-17
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| | |||| ||| || || ||||| || | ||| | || |||||| | ||||| |||
Sbjct 142624 GCCTCAAACTTCCTTGATATTAAGCCGCTCTTGGATGTGGGCTGCAAGACCGTGGCGAAC 142683
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||| |||||||||||||| || |||||||
Sbjct 142684 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 142732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107052703824118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |