Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1011 176 7e-38 seq160 114 2e-19 seq589 111 2e-18 seq85 98.7 2e-14 >seq1011 Length=119094 Score = 176 bits (194), Expect = 7e-38 Identities = 242/335 (72%), Gaps = 19/335 (6%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| || || |||||||| || ||||| Sbjct 29491 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 29432 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||||| || || || || ||| ||||| |||||||||||||| Sbjct 29431 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCGGC 29375 Query 794457 AAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCAT 794513 |||| | || || |||| |||||| || || | | ||| ||||||||| || Sbjct 29374 AAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGAT 29321 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573 ||||| || ||||| || | | | || | || || |||||| ||||||| | Sbjct 29320 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG-- 29263 Query 794574 CTTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 || | | | | || ||||| ||||||||||||||| || ||||||||||| |||||| Sbjct 29262 CTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 29203 Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || || |||||||||||| || ||||| Sbjct 29202 ATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 29168 Score = 109 bits (120), Expect = 9e-18 Identities = 174/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| ||| Sbjct 29813 TGACACCAGCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGA 29754 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || |||||||| | | |||| ||||||| |||| Sbjct 29753 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGA 29694 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | ||||||| |||||||| || || || |||||||| ||| ||| || ||||| Sbjct 29693 GAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCA 29634 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || ||| || | |||| | | || || | ||| || ||| || | Sbjct 29633 TGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCAT 29574 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 29573 CGGTGATGAT 29564 >seq160 Length=70483 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| |||||||| | || |||| ||| || || || |||||||| | || ||||| || Sbjct 49741 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 49800 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | ||| || ||||| Sbjct 49801 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 49860 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || ||| | ||||| || || ||||| ||||| Sbjct 49861 GATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 49920 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || | ||| || || Sbjct 49921 GATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 49980 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| ||||| || ||||| Sbjct 49981 GGCGTTGAACAGGGTGGG 49998 >seq589 Length=154327 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | |||| ||| || || ||||| ||| | ||| |||| |||||||||||||| ||| Sbjct 142624 GCCTCAAACTTCCTTGATATTAAGCCGCTCTTGGATGTGGGCTGCAAGACCGTGGCGAAC 142683 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 142684 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 142732 >seq85 Length=101844 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 48214 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAATTCACCCGGCAG 48155 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||| || || | ||||||||||| |||| Sbjct 48154 GATCAATCGGACAGATGTCTGGATCTCTCGGG 48123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916134281212706