Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 176 7e-38
seq160 114 2e-19
seq589 111 2e-18
seq85 98.7 2e-14
>seq1011
Length=119094
Score = 176 bits (194), Expect = 7e-38
Identities = 242/335 (72%), Gaps = 19/335 (6%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| |||| || || |||||||| || |||||
Sbjct 29491 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 29432
Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||||||| ||||||| || || || || ||| ||||| ||||||||||||||
Sbjct 29431 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCGGC 29375
Query 794457 AAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCAT 794513
|||| | || || |||| |||||| || || | | ||| ||||||||| ||
Sbjct 29374 AAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGAT 29321
Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573
||||| || ||||| || | | | || | || || |||||| ||||||| |
Sbjct 29320 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG-- 29263
Query 794574 CTTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631
|| | | | | || ||||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 29262 CTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 29203
Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||||| || || |||||||||||| || |||||
Sbjct 29202 ATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 29168
Score = 109 bits (120), Expect = 9e-18
Identities = 174/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| ||| || |||||||||||||| |||
Sbjct 29813 TGACACCAGCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGA 29754
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | || |||||||| | | |||| ||||||| ||||
Sbjct 29753 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGA 29694
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | ||||||| |||||||| || || || |||||||| ||| ||| || |||||
Sbjct 29693 GAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCA 29634
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || ||| || | |||| | | || || | ||| || ||| || |
Sbjct 29633 TGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCAT 29574
Query 794131 CGATGATGAT 794140
|| |||||||
Sbjct 29573 CGGTGATGAT 29564
>seq160
Length=70483
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| |||||||| | || |||| ||| || || || |||||||| | || ||||| ||
Sbjct 49741 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 49800
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||| | ||| || | ||| || |||||
Sbjct 49801 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 49860
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| |||||| || | || ||| | ||||| || || ||||| |||||
Sbjct 49861 GATACCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 49920
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || || | ||| || ||
Sbjct 49921 GATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 49980
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||| ||||| || |||||
Sbjct 49981 GGCGTTGAACAGGGTGGG 49998
>seq589
Length=154327
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | |||| ||| || || ||||| ||| | ||| |||| |||||||||||||| |||
Sbjct 142624 GCCTCAAACTTCCTTGATATTAAGCCGCTCTTGGATGTGGGCTGCAAGACCGTGGCGAAC 142683
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| ||||| || ||||||||||| || |||||||
Sbjct 142684 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 142732
>seq85
Length=101844
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || |||
Sbjct 48214 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAATTCACCCGGCAG 48155
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||||| || || | ||||||||||| ||||
Sbjct 48154 GATCAATCGGACAGATGTCTGGATCTCTCGGG 48123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916134281212706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |