Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq160 309 3e-79 seq378 131 2e-25 seq422 107 2e-18 seq434 104 2e-17 >seq160 Length=70483 Score = 309 bits (342), Expect = 3e-79 Identities = 1131/1752 (65%), Gaps = 49/1752 (3%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 |||||| ||| |||||||| || ||||| ||||| ||||| | |||| | |||| Sbjct 48482 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGA 48541 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 ||||||||| | |||||||| || |||||||| ||||| ||| | |||| Sbjct 48542 GAA---ATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATGTTGGGGATG 48598 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | |||||| | |||| || | || ||| | || | | ||| | Sbjct 48599 TTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCG 48658 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 |||| |||||| | || || | | || || ||||| ||||||||||| || || Sbjct 48659 GTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACA 48718 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | || | |||| || | || || || ||||||||||||||| |||||| Sbjct 48719 CGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGG 48778 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || || ||||| || | |||| ||||||| |||| | | || Sbjct 48779 GACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG 48838 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | ||| || | |||| ||||| || || || | || | |||||||||| Sbjct 48839 ATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGCTTGACATCCCACATGTCG 48898 Query 148470 TACTGCAGAATGCCG-CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 | || || ||||| ||| | || | | |||| | | || || || || | | | Sbjct 48899 AATTGGAGGATGCCCTCGGATGCAGGTGAT-CCCTTGAATGATTCATAGGGACCCTCCAC 48957 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | || ||||| || || ||| ||| || ||||| || ||| | Sbjct 48958 CTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTT 49017 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTC 148645 ||| |||| | | |||| || | ||||| ||||| | || ||||| Sbjct 49018 GTT---CAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGCAGAGCAAGGAAAGCGTC 49074 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 |||||| ||||| || || || |||||||| ||||| |||||| | ||| || Sbjct 49075 GGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTC 49134 Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765 || || || ||||||||| || |||||||||| ||| ||||| || |||||||| || Sbjct 49135 CTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACCACCTTAGT 49194 Query 148766 AATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACG-ATGCATCGGT 148815 || | | ||| | ||| ||||| |||| || || | ||| | Sbjct 49195 AACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTAGTCGACATAAGCAGGG-- 49252 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 | ||| | |||||| || ||||| || || ||| || ||||| | |||||| | || Sbjct 49253 --AGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATGA 49310 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||||| ||| || ||| || ||| |||| |||||| || |||||||||| || Sbjct 49311 TCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGT 49370 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA 148995 |||| || |||||||| |||||| | || ||||| || ||| | |||| ||| Sbjct 49371 TGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATGG 49430 Query 148996 ACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTAT 149051 | ||| | ||| ||||| | ||||| || || ||||||| |||||| Sbjct 49431 AATACCACAGCTTCTGAGCGCGAATGGTCTTGCGGCCA----CGTCCCTCCTTCTCGTAC 49486 Query 149052 AAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC 149111 ||||| ||||||| ||||||| ||||| || | || || ||||| | || Sbjct 49487 TTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG 49546 Query 149112 GGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACC 149171 ||||||||||||| ||| | || | | || |||||||| || |||||||| | | Sbjct 49547 GGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATC 49606 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGG 149231 ||||| || | | ||| || || | ||||| ||| ||| ||| || Sbjct 49607 CAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGA 49666 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | || | || | ||| |||||||| ||||| | ||| | || | || || Sbjct 49667 TCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGA 49726 Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 |||||| || ||||| ||||| | | | ||||||| |||||||||| ||| || Sbjct 49727 CGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGA 49786 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| || | | || ||||| || ||| |||| | |||| || || | Sbjct 49787 ATAATACCGTTAGAGGTACCGTTGGTGCCAGC-AATGTAAGAGCCGGTGGCACGGATGCG 49845 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GCCGAG 149464 ||| ||||| | |||||| || || ||| | ||| || || || || ||| | ||| Sbjct 49846 GTGGACGTTCAAGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACACGTCTTCAGAG 49904 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 ||| ||||| |||||||||||||| ||||||| | || ||||| ||| ||| Sbjct 49905 TGTC--ATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGAGGACAG 49962 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCT 149583 || | | || ||||| ||||| ||||||| ||| || || || | || || Sbjct 49963 CTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 50022 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 | ||| | | ||| | ||| || || || || |||||||| || ||| || | | Sbjct 50023 AG-ACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATACCAACAG 50081 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| | ||| ||||| |||||||| | | ||| ||| || || | || Sbjct 50082 ACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGGAGGT 50141 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | || | |||||| |||| ||||| | ||||| ||||| || ||| | ||| Sbjct 50142 ATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAA 50201 Query 149764 TGGCGGCGTCGA 149775 |||||| ||||| Sbjct 50202 TGGCGGAGTCGA 50213 >seq378 Length=193057 Score = 131 bits (144), Expect = 2e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 156096 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 156038 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 156037 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 155978 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || |||| | ||| || |||| ||||| ||| |||||||| || | Sbjct 155977 TCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 155918 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 155917 TCTTGACGAAGATTTGCATGG 155897 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || ||| ||| ||| || |||||||| || || Sbjct 156832 CTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACC-GTCTTCCAGCTGCTTACCAGCAA 156774 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || | ||||||||||| ||||| ||||| |||||||| ||||| ||||| | Sbjct 156773 AGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGT 156714 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | ||||| |||| ||||| || |||||||||||||| || | Sbjct 156713 TGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAA 156654 Query 133648 CGAAAATCTGCAT 133660 ||||||| ||||| Sbjct 156653 CGAAAATTTGCAT 156641 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | || | | | ||||| |||||||| || Sbjct 156381 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCAAGCTGCTTACC 156323 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| |||||||| || ||||| || |||||| ||| Sbjct 156322 AGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTT 156263 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | |||||| |||| ||||| ||| || || || || || Sbjct 156262 GACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 156203 Query 133643 TTTTACGA 133650 || |||| Sbjct 156202 CTTGACGA 156195 >seq422 Length=18081 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || | ||||||||||| || || ||||| |||||| Sbjct 4367 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 4308 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 4307 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 4248 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 4247 GTCTTGCCCGTCAGGGTCTTCACGAAA 4221 >seq434 Length=177494 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | || | | | ||||| |||||||| | Sbjct 69315 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCCAGCTGCTTAC 69373 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 69374 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 69433 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 69434 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 69493 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 69494 TCTTGACGAAAATCTGCAT 69512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414430930960