Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq378 95.1 3e-14 >seq378 Length=193057 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||| | || ||||| ||||| || |||| Sbjct 156199 CAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGACAA 156258 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || || || ||| || |||| ||||| Sbjct 156259 CGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGATCTT 156318 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | || ||||| | || | |||| |||||| ||||||| ||||| Sbjct 156319 CGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTC 156378 Query 206364 TACTCTTCACCTTGT 206378 |||||| |||||||| Sbjct 156379 TACTCTCCACCTTGT 156393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || ||||| ||||| || ||| || ||| Sbjct 156416 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCAGAC 156475 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || || ||| ||||| || Sbjct 156476 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAG 156535 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || |||||| | || || || | |||||| ||| |||||| | Sbjct 156536 CGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACTACAACATT 156595 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| || ||||||||||| Sbjct 156596 CAGAAGGAGAGCACACTTCACCTTGT 156621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181804840248734