Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1011 248 1e-59 seq160 120 4e-21 >seq1011 Length=119094 Score = 248 bits (274), Expect = 1e-59 Identities = 392/546 (72%), Gaps = 23/546 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||| ||||||||||| ||| | || | Sbjct 28954 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATC 29012 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 29013 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 29072 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 29073 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 29131 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 29132 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069 || || ||||||||||| || |||||||| || || |||||||||||| ||||| || | Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | || | ||||||| |||||| || || | || | | | || |||| Sbjct 29252 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 29309 Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||||| ||||| | ||| | ||||||| |||| || Sbjct 29310 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 29364 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 || | |||||||| ||||||||| ||||| ||| ||| || || | | ||||||| Sbjct 29365 GGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 29422 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 |||||||||||||| || |||||||| |||| | |||| |||||| | ||| ||| Sbjct 29423 TGGCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCG 29481 Query 1456304 CGACGA 1456309 ||||| Sbjct 29482 TGACGA 29487 Score = 91.5 bits (100), Expect = 2e-12 Identities = 225/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506 ||| ||||| |||||||||||| ||||| || | | | |||| || |||| | | Sbjct 29489 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT---CACCTCAAGAA-CCGTGCCAG 29544 Query 1456507 C---GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 | || ||| | | |||||| ||| || ||| || ||| | || || | | Sbjct 29545 CAAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623 |||| | || || || || ||||||||||| ||| | || ||| |||||||| | Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATCG 29663 Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC 1456683 | ||| || |||||||| ||||| | || |||||| || ||||| |||| | | || Sbjct 29664 AGTTT-GTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACG-AGAAGATCTACAAGTCTGC 29721 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||| || | |||||| || || |||| |||||||||||||| || ||| Sbjct 29722 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAA 29781 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 || || | ||| ||| ||||| || |||| Sbjct 29782 GCGTGTCGCCGACTACCAGAAGGCTGGTGTCA 29813 >seq160 Length=70483 Score = 120 bits (132), Expect = 4e-21 Identities = 202/290 (70%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| |||| ||| |||||| || | ||||| || || || ||||| || |||| Sbjct 50029 CATGTCT-AGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTCAACGCCGGTACCCCGC 49971 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| || | |||||||||| || |||||||| |||| Sbjct 49970 AGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATGACAGCATCGAGGGTATCT 49911 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 ||||||| || ||| ||| || | || |||||| ||| || || ||||| || || Sbjct 49910 ATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACG 49851 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| | ||| | ||| | || ||||||||||| || ||||| Sbjct 49850 TCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTA 49791 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || | ||||||||||| || || ||| |||| || | || ||||| ||| Sbjct 49790 TTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTCGATCAG 49741 Score = 95.1 bits (104), Expect = 2e-13 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 262114 GGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAG 262173 |||||| | |||||| || | |||| |||| |||||||||| ||| ||||| | || Sbjct 49420 GGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAG 49361 Query 262174 CAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 ||||||| |||||||||| |||| | ||| ||||||| |||||||||||| || ||| Sbjct 49360 CAACCAGAAGAACCTGGGAACCATCCGCAGCT-CCAACCTCTGCACCGAGATCATCGAGT 49302 Query 262233 TTTCGTCGCCCA-CCGAGGCAAGTGTGTGCAACCT 262266 | || |||| ||||| ||| |||||||| Sbjct 49301 ACT-GTGCCCCAGACGAGGTTGCTGTTTGCAACCT 49268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177709539762748