Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 248 1e-59
seq160 120 4e-21
>seq1011
Length=119094
Score = 248 bits (274), Expect = 1e-59
Identities = 392/546 (72%), Gaps = 23/546 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||||||||| ||||||||||| ||| | || |
Sbjct 28954 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATC 29012
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | ||||| ||| ||| ||| |||||| | ||||||
Sbjct 29013 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 29072
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||| ||||| ||| |||||| |||||||| || ||||||||||| ||
Sbjct 29073 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 29131
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | |||||||| | || ||||| || | || ||||| |||||||||
Sbjct 29132 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069
|| || ||||||||||| || |||||||| || || |||||||||||| ||||| || |
Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251
Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | | || | ||||||| |||||| || || | || | | | || ||||
Sbjct 29252 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 29309
Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186
|||||||||| || ||||||||| ||||| | ||| | ||||||| |||| ||
Sbjct 29310 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 29364
Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243
|| | |||||||| ||||||||| ||||| ||| ||| || || | | |||||||
Sbjct 29365 GGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 29422
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303
|||||||||||||| || |||||||| |||| | |||| |||||| | ||| |||
Sbjct 29423 TGGCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCG 29481
Query 1456304 CGACGA 1456309
|||||
Sbjct 29482 TGACGA 29487
Score = 91.5 bits (100), Expect = 2e-12
Identities = 225/332 (68%), Gaps = 12/332 (4%)
Strand=Plus/Plus
Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506
||| ||||| |||||||||||| ||||| || | | | |||| || |||| | |
Sbjct 29489 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT---CACCTCAAGAA-CCGTGCCAG 29544
Query 1456507 C---GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563
| || ||| | | |||||| ||| || ||| || ||| | || || | |
Sbjct 29545 CAAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTTGAC 29604
Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623
|||| | || || || || ||||||||||| ||| | || ||| |||||||| |
Sbjct 29605 CGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATCG 29663
Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC 1456683
| ||| || |||||||| ||||| | || |||||| || ||||| |||| | | ||
Sbjct 29664 AGTTT-GTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACG-AGAAGATCTACAAGTCTGC 29721
Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743
|||||| || | |||||| || || |||| |||||||||||||| || |||
Sbjct 29722 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAA 29781
Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774
|| || | ||| ||| ||||| || ||||
Sbjct 29782 GCGTGTCGCCGACTACCAGAAGGCTGGTGTCA 29813
>seq160
Length=70483
Score = 120 bits (132), Expect = 4e-21
Identities = 202/290 (70%), Gaps = 2/290 (1%)
Strand=Plus/Minus
Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952
|||||| |||| ||| |||||| || | ||||| || || || ||||| || ||||
Sbjct 50029 CATGTCT-AGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTCAACGCCGGTACCCCGC 49971
Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012
| ||| || || ||||| || | |||||||||| || |||||||| ||||
Sbjct 49970 AGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATGACAGCATCGAGGGTATCT 49911
Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
||||||| || ||| ||| || | || |||||| ||| || || ||||| || ||
Sbjct 49910 ATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACG 49851
Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132
||| | || ||| | ||| | ||| | || ||||||||||| || |||||
Sbjct 49850 TCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTA 49791
Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| | ||||||||||| || || ||| |||| || | || ||||| |||
Sbjct 49790 TTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTCGATCAG 49741
Score = 95.1 bits (104), Expect = 2e-13
Identities = 117/155 (75%), Gaps = 4/155 (3%)
Strand=Plus/Minus
Query 262114 GGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAG 262173
|||||| | |||||| || | |||| |||| |||||||||| ||| ||||| | ||
Sbjct 49420 GGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAG 49361
Query 262174 CAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232
||||||| |||||||||| |||| | ||| ||||||| |||||||||||| || |||
Sbjct 49360 CAACCAGAAGAACCTGGGAACCATCCGCAGCT-CCAACCTCTGCACCGAGATCATCGAGT 49302
Query 262233 TTTCGTCGCCCA-CCGAGGCAAGTGTGTGCAACCT 262266
| || |||| ||||| ||| ||||||||
Sbjct 49301 ACT-GTGCCCCAGACGAGGTTGCTGTTTGCAACCT 49268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177709539762748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |