Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq378 156 4e-33 seq434 140 3e-28 seq422 114 1e-20 >seq378 Length=193057 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||||| ||||||||||| ||| | Sbjct 156867 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 156808 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||||||||||||| ||||| ||||| ||||||||||| | |||| Sbjct 156807 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 156748 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||||| ||| | |||| | | |||||| |||||||| Sbjct 156747 ATGCCCTCCTTGTCCTGAATCTTGGACTTGAC-GTTGTCGATGGTGTCGGAAGATTCCAC 156689 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || |||| ||| || || || || ||||| Sbjct 156688 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| ||| ||| || || |||| || ||||||||||| Sbjct 156609 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCA 156550 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | |||||||| |||| ||||| | |||||||||| |||||| ||| Sbjct 156549 GCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTG 156490 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||| ||||| ||||||| ||||| || || || ||||| || Sbjct 156489 ACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTC 156430 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 156429 TTGACGAAGATCTGCAT 156413 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||||| | || || || ||||| || || || Sbjct 156090 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 156031 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||||| |||||| ||||| | | Sbjct 156030 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 155971 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || || ||||| | ||||| || || || || | || || || Sbjct 155970 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 155911 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 155910 GAAGATTTGCAT 155899 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | |||||| | || || ||||||||||| || || Sbjct 156376 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 156317 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||| | ||| | | |||||| ||| |||||| Sbjct 156316 GATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTT 156269 >seq434 Length=177494 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || | ||| |||||| || |||||||| |||| Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || |||||||||||||| || || ||||| ||||||||||||| ||| Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| || |||||| Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69465 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || ||||| | || || || || |||||||| Sbjct 69466 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq422 Length=18081 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || ||||| | Sbjct 4402 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 4343 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||||| |||| || |||||||||| |||||| ||| | | | Sbjct 4342 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4283 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | ||||| || || ||||||| || ||||| | Sbjct 4282 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4223 Query 35727 A 35727 | Sbjct 4222 A 4222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450787660794320