Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq160 138 2e-27 >seq160 Length=70483 Score = 138 bits (152), Expect = 2e-27 Identities = 405/613 (66%), Gaps = 16/613 (3%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||||| |||||||| || || || Sbjct 49336 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 49395 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || ||||||| || |||| | || | || || | ||| | | ||| || Sbjct 49396 GGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCACAGCTTCTGAGCGCGAAT 49455 Query 69471 TACGGTCTTGTA---ACGCTTCTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 ||||||| ||| ||| || || || || | || | |||| ||||| || Sbjct 49456 ---GGTCTTGCGGCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCC--TCGAACTC- 49509 Query 69526 TCTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 ||| ||| | || ||| | | ||||| ||||| || || ||||| | | ||| | Sbjct 49510 -CTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCA 49568 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 | | || ||| || ||||| || |||||||||||||| ||||| | || | || | Sbjct 49569 AGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCAC 49628 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | | ||||| || || || || ||||| || ||||| | | |||| Sbjct 49629 GAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAG 49688 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||| || || || || || || | | | || || || || || || |||||||| | Sbjct 49689 CGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGA 49748 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 |||||||||||||| || | |||| ||||| ||||||||||| ||||| |||| | Sbjct 49749 CATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGT 49808 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || |||| ||| ||| || | || || || | | || || || | Sbjct 49809 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 49868 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTA 69942 | ||||| || || || | |||| |||| |||| |||||||| |||||||| ||||| Sbjct 49869 CAGCCATCTTGGAAATCATGGCAC-ACGTCTTCAGAGTGTCATAGATACCCTCGATGCTG 49927 Query 69943 TCATCTATCATGT 69955 ||||| |||||| Sbjct 49928 TCATCCTTCATGT 49940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686899749976560