Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1011 125 2e-23 >seq1011 Length=119094 Score = 125 bits (138), Expect = 2e-23 Identities = 360/540 (67%), Gaps = 19/540 (4%) Strand=Plus/Plus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| || ||||||||||| |||||||| || ||| |||||| | || || Sbjct 28988 TTCTGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTG 29047 Query 443397 TCTAGCCATGAACGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| || || | ||||| | |||| ||||||||||||| | || Sbjct 29048 ---AACGATGA-CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGA 29103 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGC 443512 || || ||| ||||| ||||| ||| ||| || ||| | | ||||||| Sbjct 29104 TGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC 29163 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 || | |||||||| ||||| | ||||||||||| ||| ||||| |||| | Sbjct 29164 TCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCT 29223 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCA 443631 | | ||| | || ||| || || || || ||||| | | ||| || || || Sbjct 29224 GCTCATCGACAC-CTACATC--AAGGAGAACAGCCAGCGCAGCTACCTCTTCAACGC-CA 29279 Query 443632 T---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 | ||||| || |||| | ||| | |||||| | ||||| || | || Sbjct 29280 TTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAG-GAC 29338 Query 443689 AAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || | ||| | || | | |||| || || || ||||| | ||||| || | || || Sbjct 29339 AAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTC 29398 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 ||||| |||| ||||||||||||||| | || ||||| || || |||| |||||||| Sbjct 29399 AGCGGTGCCTTT-GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGAC 29457 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 |||| ||||| || ||| ||| ||||||||| |||| ||||| ||||| || || Sbjct 29458 CTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCT 29517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588314550515030