Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq160 250 3e-61 seq1011 118 1e-21 >seq160 Length=70483 Score = 250 bits (276), Expect = 3e-61 Identities = 1009/1559 (65%), Gaps = 49/1559 (3%) Strand=Plus/Plus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609 ||||||||| || ||||| | | ||| ||||| ||||| || | ||| || ||| Sbjct 48571 CTTGATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTC----TCAGCAATGA 48626 Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 | | |||||| | | ||||||||| || | | ||||| |||| || Sbjct 48627 TACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGG 48686 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||||| ||||| || || ||| | || | |||||||||| | ||||| | Sbjct 48687 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGG 48746 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || || |||| || || | || ||| |||||||| || || | Sbjct 48747 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 48806 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | | ||||| || ||| | ||||||||| | |||||||| ||||| || Sbjct 48807 GGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 48866 Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || || || || | |||||||||| || || || | || | ||| || || Sbjct 48867 ACAGGTCAGAG-GGCTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 48924 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCA 110963 || |||| || | |||||||| ||| | | | || | || | || ||||| | Sbjct 48925 TGATCCCTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCTA 48983 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| ||||| || || || |||||||| | |||| ||| || || || | Sbjct 48984 GGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACT 49043 Query 111024 CAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 |||| | ||| || | || || | || || ||||| || ||||| | |||||| Sbjct 49044 CAAAGGGCATGCG-CAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATG 49102 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 |||| ||| ||||| || || || || || || || || || |||||| Sbjct 49103 GGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATG 49162 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | ||| || || | ||| | ||| || | |||||| || || | | | || | Sbjct 49163 ATCTTGTTAAGGTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAG 49222 Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 || | | | |||||| || ||||| | || |||| ||||||||||| Sbjct 49223 CAGCCTTCGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCA 49282 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| || | |||||| | || || || || | |||||| || || || Sbjct 49283 ACCTCGTCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTT 49342 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 |||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| | Sbjct 49343 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTA 49402 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGC 111441 || ||||| ||||| | | | || | | ||| | | || | | | ||||| Sbjct 49403 CCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCACAGCTTCTGAGCGCG----AATGGT 49458 Query 111442 GTTG--GCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498 ||| ||| ||||||||| ||||||||| || | || || |||||||| || | Sbjct 49459 CTTGCGGCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCC-AT 49517 Query 111499 CGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTC- 111555 || ||| | || || || || || || || || | || | ||| | ||| ||| Sbjct 49518 AGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCT 49574 Query 111556 -CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACAC 111613 |||||| ||||||||||| || || |||||||| || | | | || || || | | Sbjct 49575 TCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCACGAGCG 49633 Query 111614 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 111673 || ||||||| | || ||||| || | ||||||||||| | || || |||||| Sbjct 49634 CGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGC 49693 Query 111674 CATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACA 111727 || ||||| || |||| || | | || ||||| ||| | |||| ||| Sbjct 49694 CAGGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTACCACCCTGATCGACA 49750 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 || | || ||| ||| || || |||||||| ||||||||||| | || ||| || Sbjct 49751 TATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTG 49810 Query 111788 GTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 || || ||| ||| |||| | | |||| || || || ||||| ||| Sbjct 49811 GTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 49870 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 ||| ||| || || |||||| | | ||||| |||||||||| | ||| ||| Sbjct 49871 GCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCA 49930 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT-GGTGTACCAGCATTGAA 111966 ||||| || ||| | |||||| ||||| ||| || || || ||||| || ||||| Sbjct 49931 TCCTTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAA 49989 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAG 112024 ||||| || | || || |||| | |||| ||||| || ||||||||||| | Sbjct 49990 CAGGGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGG 50047 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| |||||||| || || ||| || | | || ||||||| ||||| |||||| Sbjct 50048 ACACGCTCAATGTCATCTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGG 50106 >seq1011 Length=119094 Score = 118 bits (130), Expect = 1e-21 Identities = 348/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || || ||| ||||| Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | | Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGA 29331 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || || ||||| | |||||||| ||| || || | || | ||||| | | Sbjct 29330 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 29271 Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 | | | ||| | | | | || ||||| ||||| |||| || | || || || Sbjct 29270 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 29213 Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| || | | | ||| ||| | || | ||||||| | || || ||| | Sbjct 29212 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 29154 Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 |||| ||||| |||| || | | | ||||| ||||| ||||| || | Sbjct 29153 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 29095 Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129 |||||||| |||||||||| ||||| | ||| || | || |||| || | ||| Sbjct 29094 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 29035 Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 29034 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023725678400