Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq160 250 3e-61
seq1011 118 1e-21
>seq160
Length=70483
Score = 250 bits (276), Expect = 3e-61
Identities = 1009/1559 (65%), Gaps = 49/1559 (3%)
Strand=Plus/Plus
Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609
||||||||| || ||||| | | ||| ||||| ||||| || | ||| || |||
Sbjct 48571 CTTGATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTC----TCAGCAATGA 48626
Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666
| | |||||| | | ||||||||| || | | ||||| |||| ||
Sbjct 48627 TACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGG 48686
Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726
|||||||| ||||| || || ||| | || | |||||||||| | ||||| |
Sbjct 48687 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGG 48746
Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786
| || ||||| || || || |||| || || | || ||| |||||||| || || |
Sbjct 48747 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 48806
Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846
| | ||||| || ||| | ||||||||| | |||||||| ||||| ||
Sbjct 48807 GGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 48866
Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904
| | | || || || || | |||||||||| || || || | || | ||| || ||
Sbjct 48867 ACAGGTCAGAG-GGCTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 48924
Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCA 110963
|| |||| || | |||||||| ||| | | | || | || | || ||||| |
Sbjct 48925 TGATCCCTTGAATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCTA 48983
Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023
||| ||||| || || || |||||||| | |||| ||| || || || |
Sbjct 48984 GGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACT 49043
Query 111024 CAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082
|||| | ||| || | || || | || || ||||| || ||||| | ||||||
Sbjct 49044 CAAAGGGCATGCG-CAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATG 49102
Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142
|||| ||| ||||| || || || || || || || || || ||||||
Sbjct 49103 GGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATG 49162
Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202
| ||| || || | ||| | ||| || | |||||| || || | | | || |
Sbjct 49163 ATCTTGTTAAGGTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAG 49222
Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262
|| | | | |||||| || ||||| | || |||| |||||||||||
Sbjct 49223 CAGCCTTCGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCA 49282
Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322
||| || | |||||| | || || || || | |||||| || || ||
Sbjct 49283 ACCTCGTCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTT 49342
Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382
|||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| |
Sbjct 49343 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTA 49402
Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGC 111441
|| ||||| ||||| | | | || | | ||| | | || | | | |||||
Sbjct 49403 CCAGTCTCGGTCTGGGCCTCCAAGATGGAATACCACAGCTTCTGAGCGCG----AATGGT 49458
Query 111442 GTTG--GCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498
||| ||| ||||||||| ||||||||| || | || || |||||||| || |
Sbjct 49459 CTTGCGGCCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCC-AT 49517
Query 111499 CGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTC- 111555
|| ||| | || || || || || || || || | || | ||| | ||| |||
Sbjct 49518 AGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCT 49574
Query 111556 -CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACAC 111613
|||||| ||||||||||| || || |||||||| || | | | || || || | |
Sbjct 49575 TCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCACGAGCG 49633
Query 111614 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 111673
|| ||||||| | || ||||| || | ||||||||||| | || || ||||||
Sbjct 49634 CGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGC 49693
Query 111674 CATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACA 111727
|| ||||| || |||| || | | || ||||| ||| | |||| |||
Sbjct 49694 CAGGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTACCACCCTGATCGACA 49750
Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787
|| | || ||| ||| || || |||||||| ||||||||||| | || ||| ||
Sbjct 49751 TATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTG 49810
Query 111788 GTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847
|| || ||| ||| |||| | | |||| || || || ||||| |||
Sbjct 49811 GTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 49870
Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907
||| ||| || || |||||| | | ||||| |||||||||| | ||| |||
Sbjct 49871 GCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCA 49930
Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT-GGTGTACCAGCATTGAA 111966
||||| || ||| | |||||| ||||| ||| || || || ||||| || |||||
Sbjct 49931 TCCTTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAA 49989
Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAG 112024
||||| || | || || |||| | |||| ||||| || ||||||||||| |
Sbjct 49990 CAGGGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGG 50047
Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
||| |||||||| || || ||| || | | || ||||||| ||||| ||||||
Sbjct 50048 ACACGCTCAATGTCATCTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGG 50106
>seq1011
Length=119094
Score = 118 bits (130), Expect = 1e-21
Identities = 348/524 (66%), Gaps = 13/524 (2%)
Strand=Plus/Minus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| |||||||| || || || || || || || || ||| |||||
Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| | || | | || | ||| |||||||||
Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836
|||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | |
Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGA 29331
Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896
||| || || ||||| | |||||||| ||| || || | || | ||||| | |
Sbjct 29330 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 29271
Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954
| | | ||| | | | | || ||||| ||||| |||| || | || || ||
Sbjct 29270 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 29213
Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013
||| || | | | ||| ||| | || | ||||||| | || || ||| |
Sbjct 29212 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 29154
Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072
|||| ||||| |||| || | | | ||||| ||||| ||||| || |
Sbjct 29153 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 29095
Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129
|||||||| |||||||||| ||||| | ||| || | || |||| || | |||
Sbjct 29094 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 29035
Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
||||||| ||||| ||||||| ||||| ||||| || |||||
Sbjct 29034 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628023725678400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |