Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq160 244 1e-59
seq1011 129 7e-25
>seq160
Length=70483
Score = 244 bits (270), Expect = 1e-59
Identities = 1171/1839 (64%), Gaps = 43/1839 (2%)
Strand=Plus/Plus
Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857
|||| | |||| ||||| || ||| ||||| | || ||||||||||| || |||
Sbjct 48344 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 48403
Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917
||||| || |||||||| || | ||||| || | |||| | || ||
Sbjct 48404 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 48463
Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977
| |||| || ||||| ||||| ||||| ||||| || ||||| ||||||||
Sbjct 48464 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 48523
Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033
| | || || || ||| | ||||| || ||| |||| ||| ||| |||||
Sbjct 48524 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 48579
Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093
|| ||||| | ||| || || ||||| || | | | || | | ||||||
Sbjct 48580 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCAT 48639
Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150
| | |||||||| || | | || |||| |||| || ||||||||
Sbjct 48640 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 48696
Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210
||||| || || ||| |||| | | ||||| |||| ||||| ||||| |||||
Sbjct 48697 CTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 48756
Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270
||| ||||| |||| || |||| || ||| || ||||| || || | ||| | |||
Sbjct 48757 CTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCT 48816
Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGC 118328
||| || ||| | ||| | || | |||||||| | |||||| || | | | ||
Sbjct 48817 GTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGA 48876
Query 118329 TTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 118388
| || | | |||||| || || |||||||| || | ||| || || |||||||
Sbjct 48877 G--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 48934
Query 118389 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 118448
|||| ||||| || ||||| |||| || | || ||||| ||||| |||||
Sbjct 48935 AATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGG 48994
Query 118449 TACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT 118508
|| ||||| ||||| || | |||| | |||||| || ||||| | |
Sbjct 48995 TAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATG 49054
Query 118509 CGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567
|| || | || || | || || ||||| |||||||| | ||||| || || || |
Sbjct 49055 CG-CAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCG 49113
Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627
||| || || || || || || || || || ||| || | | | || ||
Sbjct 49114 CATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAG 49173
Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687
|| | || ||||| || | |||||| ||||| | | || | | || |
Sbjct 49174 GTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTT 49233
Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747
| | |||||| ||| ||||| | || ||||| || || |||| ||| ||
Sbjct 49234 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGG 49293
Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807
|| |||||| || || || ||||| | ||| || || ||||| |||| ||||||
Sbjct 49294 GGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 49353
Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867
|| || ||| ||| || ||||||||||| |||||| | || | || ||||| ||
Sbjct 49354 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 49413
Query 118868 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926
|||| || | || | | ||| | | || | ||| | | || | | | || |
Sbjct 49414 CTGGGCCTCCAAGATGGAATACCACAGCTTCTG-AGCGCGAATGGTCTTGCGGCCACGTC 49472
Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986
|||| | ||||||||| || | || || ||||| || || | || | || |
Sbjct 49473 CCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGC 49532
Query 118987 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAACCCGCTTCA 119043
| || || || |||| || | ||| | ||| | ||| || |||||| |||||||
Sbjct 49533 CAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTCA 49589
Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103
||||||| || || |||||||| || ||| | || ||| ||| | ||||| | |
Sbjct 49590 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGC 49649
Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163
| || || || | || | || || | || || |||||||| || || ||||| |
Sbjct 49650 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGA 49709
Query 119164 CCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217
|| | | || | |||| |||| |||| | ||||| || |||||| ||
Sbjct 49710 TGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGT 49766
Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG 119277
| || || |||||||| ||||| ||||| | || || || || || ||| ||
Sbjct 49767 TGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAG 49826
Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337
| |||| | || ||||| || || || ||||| || ||| ||| || ||
Sbjct 49827 AGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCA 49886
Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397
|| ||| | | ||| || | ||||| || ||||| |||| |||| | ||| |
Sbjct 49887 TGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCA 49946
Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456
|||||| |||| || |||||| || ||||| |||||||| || || || | ||
Sbjct 49947 AGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCA 50005
Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514
||| ||| | | |||| ||||| || ||| ||||||| ||| |||||| |
Sbjct 50006 TGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCAT 50063
Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 119574
| || ||||| | || || ||||| | ||||| || ||| || | | | |
Sbjct 50064 CTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGC 50123
Query 119575 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
|||| ||| || ||||||| |||||| |||||||
Sbjct 50124 CATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 50162
>seq1011
Length=119094
Score = 129 bits (142), Expect = 7e-25
Identities = 348/523 (67%), Gaps = 11/523 (2%)
Strand=Plus/Minus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| |||||||||||||| |||||||| || || || ||| ||||||
Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | |||||| || | ||| | || |||||||||
Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194
||||| || || || |||| || |||| |||||||| | ||| | |
Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGAT 29330
Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254
|||||| || ||||| | ||||| || || || || | ||||| || || | ||
Sbjct 29329 CCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 29270
Query 130255 GA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312
|| || || | | ||| | || |||||||| | || ||||| || || ||
Sbjct 29269 GAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 29212
Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371
||| |||| | | ||| || | ||| | ||||||| | || || ||| ||
Sbjct 29211 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 29153
Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430
||| ||||| | || || | | | ||||| ||||| ||||| || | |
Sbjct 29152 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 29094
Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487
|||| || |||||||| | ||||| | || || | ||||||| || | ||||
Sbjct 29093 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 29034
Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||| |||||||| || ||||| | ||| || || |||||
Sbjct 29033 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618427052116240
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