Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq160 244 1e-59 seq1011 129 7e-25 >seq160 Length=70483 Score = 244 bits (270), Expect = 1e-59 Identities = 1171/1839 (64%), Gaps = 43/1839 (2%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | |||| ||||| || ||| ||||| | || ||||||||||| || ||| Sbjct 48344 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 48403 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| || |||||||| || | ||||| || | |||| | || || Sbjct 48404 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 48463 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 48464 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 48523 Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 | | || || || ||| | ||||| || ||| |||| ||| ||| ||||| Sbjct 48524 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 48579 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093 || ||||| | ||| || || ||||| || | | | || | | |||||| Sbjct 48580 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCAT 48639 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150 | | |||||||| || | | || |||| |||| || |||||||| Sbjct 48640 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 48696 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || || ||| |||| | | ||||| |||| ||||| ||||| ||||| Sbjct 48697 CTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 48756 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||| ||||| |||| || |||| || ||| || ||||| || || | ||| | ||| Sbjct 48757 CTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCT 48816 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGC 118328 ||| || ||| | ||| | || | |||||||| | |||||| || | | | || Sbjct 48817 GTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGA 48876 Query 118329 TTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 118388 | || | | |||||| || || |||||||| || | ||| || || ||||||| Sbjct 48877 G--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 48934 Query 118389 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 118448 |||| ||||| || ||||| |||| || | || ||||| ||||| ||||| Sbjct 48935 AATGATTCATAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCTAGGGCCGCGTGG 48994 Query 118449 TACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT 118508 || ||||| ||||| || | |||| | |||||| || ||||| | | Sbjct 48995 TAGATTGTCTCAAAGATCTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATG 49054 Query 118509 CGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 || || | || || | || || ||||| |||||||| | ||||| || || || | Sbjct 49055 CG-CAGAGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCG 49113 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || || || || || || || || || ||| || | | | || || Sbjct 49114 CATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAG 49173 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 || | || ||||| || | |||||| ||||| | | || | | || | Sbjct 49174 GTTGCGGACAACCACCTTAGTAACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTT 49233 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | | |||||| ||| ||||| | || ||||| || || |||| ||| || Sbjct 49234 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGG 49293 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| || || || ||||| | ||| || || ||||| |||| |||||| Sbjct 49294 GGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 49353 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || ||| ||| || ||||||||||| |||||| | || | || ||||| || Sbjct 49354 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 49413 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926 |||| || | || | | ||| | | || | ||| | | || | | | || | Sbjct 49414 CTGGGCCTCCAAGATGGAATACCACAGCTTCTG-AGCGCGAATGGTCTTGCGGCCACGTC 49472 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 |||| | ||||||||| || | || || ||||| || || | || | || | Sbjct 49473 CCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGC 49532 Query 118987 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAACCCGCTTCA 119043 | || || || |||| || | ||| | ||| | ||| || |||||| ||||||| Sbjct 49533 CAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTCA 49589 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || || |||||||| || ||| | || ||| ||| | ||||| | | Sbjct 49590 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGC 49649 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || || | || || |||||||| || || ||||| | Sbjct 49650 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGA 49709 Query 119164 CCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 || | | || | |||| |||| |||| | ||||| || |||||| || Sbjct 49710 TGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGT 49766 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG 119277 | || || |||||||| ||||| ||||| | || || || || || ||| || Sbjct 49767 TGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAG 49826 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 | |||| | || ||||| || || || ||||| || ||| ||| || || Sbjct 49827 AGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCA 49886 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || ||| | | ||| || | ||||| || ||||| |||| |||| | ||| | Sbjct 49887 TGGCACACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCA 49946 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 |||||| |||| || |||||| || ||||| |||||||| || || || | || Sbjct 49947 AGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCA 50005 Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| ||| | | |||| ||||| || ||| ||||||| ||| |||||| | Sbjct 50006 TGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCAT 50063 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 119574 | || ||||| | || || ||||| | ||||| || ||| || | | | | Sbjct 50064 CTCCCCAGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGC 50123 Query 119575 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 |||| ||| || ||||||| |||||| ||||||| Sbjct 50124 CATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 50162 >seq1011 Length=119094 Score = 129 bits (142), Expect = 7e-25 Identities = 348/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||||||||| |||||||| || || || ||| |||||| Sbjct 29509 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 29450 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 29449 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 29390 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || || || |||| || |||| |||||||| | ||| | | Sbjct 29389 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGAT 29330 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| || ||||| | ||||| || || || || | ||||| || || | || Sbjct 29329 CCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 29270 Query 130255 GA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 || || || | | ||| | || |||||||| | || ||||| || || || Sbjct 29269 GAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 29212 Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 ||| |||| | | ||| || | ||| | ||||||| | || || ||| || Sbjct 29211 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 29153 Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| ||||| | || || | | | ||||| ||||| ||||| || | | Sbjct 29152 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 29094 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487 |||| || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 29093 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 29034 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| || ||||| | ||| || || ||||| Sbjct 29033 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 28991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427052116240