Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq160 307 1e-78 seq1011 158 1e-33 seq1 87.8 2e-12 >seq160 Length=70483 Score = 307 bits (340), Expect = 1e-78 Identities = 943/1435 (66%), Gaps = 35/1435 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| ||||||| ||| | | ||||| || || |||||||| |||| Sbjct 50106 CCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGACATTGAGCGTGTC 50047 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||||||| || ||||| |||| | | ||| || || | || ||||| | Sbjct 50046 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACCCATGCCTCCCCCACCCTGT 49989 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || |||| ||||| |||||| | ||| || ||||| | Sbjct 49988 TCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATG 49929 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | |||||||||| ||||| | | |||||| || || ||| ||||| Sbjct 49928 ACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTG 49869 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | |||| ||| ||| || || | Sbjct 49868 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 49809 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||||||||| |||||||| || || ||| ||| || | |||| Sbjct 49808 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATG 49749 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||| | ||| ||||| || | | || |||| || ||||| |||| Sbjct 49748 TCGATCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCCTGGC 49692 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691 |||| || || | ||||||||||| | || ||||| || | || |||| |||| Sbjct 49691 ACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 49632 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | || || | ||| |||||||||||||| ||||||||||||||| | |||||| | Sbjct 49631 CT--CGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 49574 Query 104752 GA--GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807 || ||| | ||| | ||| | || || || || || ||||| || | || ||| Sbjct 49573 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTA 49517 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCG 104866 | || |||||||| || || | || ||||||||| | || || || ||| | | Sbjct 49516 T-GGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGC-AAG 49459 Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || | | ||| | || | ||||| | | || | || | || ||||||||||||| Sbjct 49458 ACCATTCGCGCT-CAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAA 49400 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || ||||| |||| ||||| || || ||||| |||| Sbjct 49399 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAAC 49340 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| ||||| || || ||| | || | | | ||| ||| || Sbjct 49339 CATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGC 49280 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--A 105103 ||| || ||||| || || | || ||||| ||||| || | | | || ||| | Sbjct 49279 TGTTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTGC 49222 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | || | | | || ||||| |||||||| || || | ||||| |||| | Sbjct 49221 TACGACTTTAAGAAGCTCCATGAAGTTACTAAGGTGGTTGTCCGCAACCTTAACAAGATC 49162 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 |||||| || ||||| || || || || || || ||| | ||||| || Sbjct 49161 ATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCC 49102 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282 |||||| | ||||| |||||||| || || | ||| || || || ||| | ||||| Sbjct 49101 ATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTG-CGCATGCCCTTTGA 49043 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || ||| || || | || || || |||||||| || || ||||| || || Sbjct 49042 GTCTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCT 48983 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 ||||| | ||| | || |||| || ||||| |||||| | || |||| || || Sbjct 48982 AGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTATGAATCATTCAAGGGATCACC 48923 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462 || || | || | || ||||| || |||||||| | || || | | || Sbjct 48922 TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGGA 48863 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| | |||||||| | ||||||||| | ||| || ||||| | ||| | || Sbjct 48862 GTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGC 48803 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || |||||||| ||| || | || || |||| || || || ||||| || ||||| Sbjct 48802 CCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTA 48743 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 48742 CACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 48688 >seq1011 Length=119094 Score = 158 bits (174), Expect = 1e-33 Identities = 356/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 28991 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 29050 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 29051 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 29110 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 29111 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 29169 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 29170 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 29228 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 29229 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 29286 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 29287 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 29346 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 29347 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 29405 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 29406 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 29465 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 29466 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 29508 >seq1 Length=676508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/261 (69%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || || || || |||||||||| |||||| ||| ||| | || | | | || | Sbjct 641814 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 641755 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || | |||||| | ||||||||||||||||||||||| || | | || || Sbjct 641754 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 641695 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 641694 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 641636 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939 ||||| || || || | ||||||||| |||||||| || || |||| |||| | Sbjct 641635 TCCTGGTGGGCCGGCAAGAATGGCACCTCGAGGAATCTTTGCACCCAGCTTCTCAAACT- 641577 Query 9940 TCTCTCAGGTTGCTT-AAGAA 9959 | ||||| ||||| ||||| Sbjct 641576 --TTTCAGGCTGCTTCAAGAA 641558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253115538960