Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq160 307 1e-78
seq1011 158 1e-33
seq1 87.8 2e-12
>seq160
Length=70483
Score = 307 bits (340), Expect = 1e-78
Identities = 943/1435 (66%), Gaps = 35/1435 (2%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| ||||||| ||| | | ||||| || || |||||||| ||||
Sbjct 50106 CCACAGCACATGATCATGCGAGTGTCTGTTGGTATCTGGGGAGATGACATTGAGCGTGTC 50047
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
||||||||||| || ||||| |||| | | ||| || || | || ||||| |
Sbjct 50046 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACCCATGCCTCCCCCACCCTGT 49989
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || |||| ||||| |||||| | ||| || ||||| |
Sbjct 49988 TCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGATG 49929
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| ||| | |||||||||| ||||| | | |||||| || || ||| |||||
Sbjct 49928 ACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTG 49869
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| ||||| || || || |||| | | |||| ||| ||| || || |
Sbjct 49868 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 49809
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||
Sbjct 49808 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATG 49749
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| |||| | ||| ||||| || | | || |||| || ||||| ||||
Sbjct 49748 TCGATCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCCTGGC 49692
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691
|||| || || | ||||||||||| | || ||||| || | || |||| ||||
Sbjct 49691 ACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 49632
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
| || || | ||| |||||||||||||| ||||||||||||||| | |||||| |
Sbjct 49631 CT--CGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 49574
Query 104752 GA--GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807
|| ||| | ||| | ||| | || || || || || ||||| || | || |||
Sbjct 49573 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTA 49517
Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCG 104866
| || |||||||| || || | || ||||||||| | || || || ||| | |
Sbjct 49516 T-GGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGC-AAG 49459
Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
|| | | ||| | || | ||||| | | || | || | || |||||||||||||
Sbjct 49458 ACCATTCGCGCT-CAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAA 49400
Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985
|| | |||||| ||||| || ||||| |||| ||||| || || ||||| ||||
Sbjct 49399 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAAC 49340
Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
||| || ||||| ||||| || || ||| | || | | | ||| ||| ||
Sbjct 49339 CATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGACGAGGTTGC 49280
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--A 105103
||| || ||||| || || | || ||||| ||||| || | | | || ||| |
Sbjct 49279 TGTTTGCAACCTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTGC 49222
Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| || | | | || ||||| |||||||| || || | ||||| |||| |
Sbjct 49221 TACGACTTTAAGAAGCTCCATGAAGTTACTAAGGTGGTTGTCCGCAACCTTAACAAGATC 49162
Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223
|||||| || ||||| || || || || || || ||| | ||||| ||
Sbjct 49161 ATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCC 49102
Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282
|||||| | ||||| |||||||| || || | ||| || || || ||| | |||||
Sbjct 49101 ATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCTCTG-CGCATGCCCTTTGA 49043
Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| ||| || || | || || || |||||||| || || ||||| || ||
Sbjct 49042 GTCTCCCGAGGCTCGTGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCT 48983
Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402
||||| | ||| | || |||| || ||||| |||||| | || |||| || ||
Sbjct 48982 AGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTATGAATCATTCAAGGGATCACC 48923
Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462
|| || | || | || ||||| || |||||||| | || || | | ||
Sbjct 48922 TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGGA 48863
Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522
||||| | |||||||| | ||||||||| | ||| || ||||| | ||| | ||
Sbjct 48862 GTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGC 48803
Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582
|| |||||||| ||| || | || || |||| || || || ||||| || |||||
Sbjct 48802 CCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTA 48743
Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637
||| | |||||||| | | || | ||| || || ||||| | ||||||||
Sbjct 48742 CACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 48688
>seq1011
Length=119094
Score = 158 bits (174), Expect = 1e-33
Identities = 356/523 (68%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || |||||| | ||||| || |||||| || |||| ||||| | | | ||
Sbjct 28991 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 29050
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| | || ||| | ||||| |||||||||| |||||||| | || ||||| |||
Sbjct 29051 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 29110
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616
|| ||||| | | ||| | ||||| || |||| | || || |||
Sbjct 29111 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 29169
Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|||||| | | ||| |||| ||| | | | || ||||| ||| ||||
Sbjct 29170 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 29228
Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733
| |||| || || ||||| | | | | | ||| | ||||| | ||||| | ||
Sbjct 29229 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 29286
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||| || |||| ||||| || || ||||| || |||||| | | |||| | |
Sbjct 29287 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 29346
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
||||||||| |||| || | || ||||| || ||||||||||||||| |||
Sbjct 29347 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 29405
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
|||| | | || | |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 29406 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 29465
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 29466 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 29508
>seq1
Length=676508
Score = 87.8 bits (96), Expect = 2e-12
Identities = 180/261 (69%), Gaps = 9/261 (3%)
Strand=Plus/Minus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
|| || || || |||||||||| |||||| ||| ||| | || | | | || |
Sbjct 641814 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 641755
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822
|| | |||||| | ||||||||||||||||||||||| || | | || ||
Sbjct 641754 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 641695
Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
|| | ||| || || ||| || || ||| | || ||||||||||||||| || ||
Sbjct 641694 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 641636
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939
||||| || || || | ||||||||| |||||||| || || |||| |||| |
Sbjct 641635 TCCTGGTGGGCCGGCAAGAATGGCACCTCGAGGAATCTTTGCACCCAGCTTCTCAAACT- 641577
Query 9940 TCTCTCAGGTTGCTT-AAGAA 9959
| ||||| ||||| |||||
Sbjct 641576 --TTTCAGGCTGCTTCAAGAA 641558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583253115538960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |