Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq378 145 2e-29 seq74 127 6e-24 seq434 114 4e-20 seq98 105 2e-17 >seq378 Length=193057 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| ||||| || ||| || ||||| || | Sbjct 156647 TTTGCATACCACCACGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGT 156588 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || || ||||| || || ||||||||||| ||||| ||||||| Sbjct 156587 AGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGAT 156528 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || |||||||| || | || ||||| || || | || |||| Sbjct 156527 CCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATG 156468 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || | ||| | ||||| ||||| | || || || || |||||||| Sbjct 156467 ATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||||||||| || || || || || || Sbjct 156415 CATACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 156356 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 156355 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGG 156296 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || |||||||| || || | || || || || || | |||||||| || Sbjct 156295 AGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTC 156236 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | |||||||| || || || || || Sbjct 156235 CACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 156197 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 156129 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 156070 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 156069 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 156010 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 156009 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTC 155950 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 155949 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899 Score = 114 bits (126), Expect = 4e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 |||||| |||||||| | | ||||| | || || || ||| || ||||| || Sbjct 156876 TTTTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTG 156817 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || || || || || ||||| || || || ||||||||||| | || ||||| Sbjct 156816 TAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGG 156757 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 ||||||||||| || || || |||||||| || | || || || || || | || || Sbjct 156756 TCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 156697 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||| || || || || | |||||| ||||| || || || || ||||| ||||| Sbjct 156696 GATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq74 Length=105533 Score = 127 bits (140), Expect = 6e-24 Identities = 222/322 (69%), Gaps = 1/322 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || ||||| || || || ||||||| || || || || || Sbjct 27590 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 27531 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| ||||| || || Sbjct 27530 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATC 27471 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 27470 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 27411 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 27410 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 27351 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| |||||||| || || || || || || ||| Sbjct 27350 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTTGTCAACCACTTT 27291 Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931 ||||| ||||||||||| |||| Sbjct 27290 GTTAACGAATTTAAGCG-CAAG 27270 >seq434 Length=177494 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || || Sbjct 69285 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 69344 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 69345 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 69404 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 69405 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 69464 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 69465 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq98 Length=95448 Score = 105 bits (116), Expect = 2e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290 |||||||||||||| | || || || ||||||||||| | ||| |||||||| |||| Sbjct 26267 AATATAACCAGTTTCAGCTGTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCAT 26326 Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350 || |||||||| ||||| | || || || |||| | | ||| |||||| || || Sbjct 26327 GGCGTGGAAGAAGAATTCGGAGGGTGTCAGACCACGGAGGTAAGAATTCTCAACGAAGCC 26386 Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACC 378409 | || | || || | ||||| || || |||| || | || || | | | ||||| Sbjct 26387 ACGAGCTTCGGGTGAGTAATCATCCTTGGTGAAATGCGGGAGAGTTCGGTATTTGAAACC 26446 Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 | ||||||| || ||||| |||||| |||| || || Sbjct 26447 GA-ATGGAATACGCTTTCCTTCAACAATCTGCTGTCC 26482 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491 ||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || | Sbjct 25454 CAGAT--TGAGAAT-TTCCTTGAGT-CGGGGCACACCGAGTGTGACGTTC---TTGGAAG 25506 Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551 ||||| ||||||||||| || || || || | || || | |||||||||||| |||| Sbjct 25507 ACACACCGGCAAAGTGGAAGGTGTTCAGCGTCATCTGCGTGGCGGGCTCACCAATGGACT 25566 Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 | || |||| || ||||||||||| || || || |||| Sbjct 25567 GGGCAGCAAGGACACCAACCATTTCACCGGGGTTAACAA 25605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515233937436362