Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq378 145 2e-29
seq74 127 6e-24
seq434 114 4e-20
seq98 105 2e-17
>seq378
Length=193057
Score = 145 bits (160), Expect = 2e-29
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || ||||| ||||| || ||| || ||||| || |
Sbjct 156647 TTTGCATACCACCACGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGT 156588
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || || ||||| || || ||||||||||| ||||| |||||||
Sbjct 156587 AGTCGCTCAAAGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGAT 156528
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || ||||| || || | || ||||
Sbjct 156527 CCGGAGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATG 156468
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| || | ||| | ||||| ||||| | || || || || ||||||||
Sbjct 156467 ATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| || ||||||||||| || || || || || ||
Sbjct 156415 CATACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 156356
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| ||||| || || ||||| ||||| || || ||||| |||||
Sbjct 156355 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGG 156296
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || |||||||| || || | || || || || || | |||||||| ||
Sbjct 156295 AGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTC 156236
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | |||||||| || || || || ||
Sbjct 156235 CACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 156197
Score = 129 bits (142), Expect = 2e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 156129 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 156070
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| || ||||| || ||||| || || ||||| ||||| |||||
Sbjct 156069 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 156010
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 156009 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTC 155950
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || || |||||
Sbjct 155949 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
Score = 114 bits (126), Expect = 4e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561
|||||| |||||||| | | ||||| | || || || ||| || ||||| ||
Sbjct 156876 TTTTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTG 156817
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|| || || || || || ||||| || || || ||||||||||| | || |||||
Sbjct 156816 TAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGG 156757
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
||||||||||| || || || |||||||| || | || || || || || | || ||
Sbjct 156756 TCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 156697
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||| || || || || | |||||| ||||| || || || || ||||| |||||
Sbjct 156696 GATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641
>seq74
Length=105533
Score = 127 bits (140), Expect = 6e-24
Identities = 222/322 (69%), Gaps = 1/322 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| || ||||| || || || ||||||| || || || || ||
Sbjct 27590 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 27531
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || || || | || || || || ||||| ||||| || ||
Sbjct 27530 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATC 27471
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 27470 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 27411
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
|||||||| || ||||| || || || || |||| ||||| || || || || || |
Sbjct 27410 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 27351
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
||||| ||||| || || | ||||| |||||||| || || || || || || |||
Sbjct 27350 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTTGTCAACCACTTT 27291
Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931
||||| ||||||||||| ||||
Sbjct 27290 GTTAACGAATTTAAGCG-CAAG 27270
>seq434
Length=177494
Score = 114 bits (126), Expect = 4e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || || |||||||| || || || || || || ||
Sbjct 69285 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 69344
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||||| ||||| || || || || ||||| ||||| | || ||||| || || ||
Sbjct 69345 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 69404
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || ||||| || || | || || | || ||
Sbjct 69405 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 69464
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || |||||||||||
Sbjct 69465 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512
>seq98
Length=95448
Score = 105 bits (116), Expect = 2e-17
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290
|||||||||||||| | || || || ||||||||||| | ||| |||||||| ||||
Sbjct 26267 AATATAACCAGTTTCAGCTGTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCAT 26326
Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350
|| |||||||| ||||| | || || || |||| | | ||| |||||| || ||
Sbjct 26327 GGCGTGGAAGAAGAATTCGGAGGGTGTCAGACCACGGAGGTAAGAATTCTCAACGAAGCC 26386
Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACC 378409
| || | || || | ||||| || || |||| || | || || | | | |||||
Sbjct 26387 ACGAGCTTCGGGTGAGTAATCATCCTTGGTGAAATGCGGGAGAGTTCGGTATTTGAAACC 26446
Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446
| ||||||| || ||||| |||||| |||| || ||
Sbjct 26447 GA-ATGGAATACGCTTTCCTTCAACAATCTGCTGTCC 26482
Score = 91.5 bits (100), Expect = 4e-13
Identities = 118/159 (74%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491
||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || |
Sbjct 25454 CAGAT--TGAGAAT-TTCCTTGAGT-CGGGGCACACCGAGTGTGACGTTC---TTGGAAG 25506
Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551
||||| ||||||||||| || || || || | || || | |||||||||||| ||||
Sbjct 25507 ACACACCGGCAAAGTGGAAGGTGTTCAGCGTCATCTGCGTGGCGGGCTCACCAATGGACT 25566
Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590
| || |||| || ||||||||||| || || || ||||
Sbjct 25567 GGGCAGCAAGGACACCAACCATTTCACCGGGGTTAACAA 25605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515233937436362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |