Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq160 241 1e-58 seq911 102 9e-17 >seq160 Length=70483 Score = 241 bits (266), Expect = 1e-58 Identities = 484/712 (68%), Gaps = 12/712 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | || Sbjct 50053 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACCCATGCCTCCCC 49997 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 |||||||||||||| ||||| || | ||| |||| |||||| |||| | || Sbjct 49996 CACCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACAT 49937 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||||||| ||||| || ||||| || || || ||| ||||||| || ||||| Sbjct 49936 GAAGGATGACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAA 49877 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467 | | | ||||||||||| | || || | || ||||||| | |||| | || Sbjct 49876 GATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATT 49819 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | | | || || | || ||||| || || ||||||||||| Sbjct 49818 GCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACT 49759 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 ||| | || ||| | ||||||||| ||||| || | || ||||||||||||||| Sbjct 49758 GCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAG 49699 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||| ||| | | ||||| || || || || ||| || || | |||||| Sbjct 49698 CCCTGGCACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAG 49639 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| |||||| |||| ||||| |||||||| || ||||||||| | || Sbjct 49638 GTCCGCGCTCGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTT 49579 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGT 53766 |||||| || ||| ||| || |||||||| ||||| ||||| |||| | | | || Sbjct 49578 GAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTG- 49520 Query 53767 CTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAA 53826 ||| || |||||||| | | ||||| || ||||| |||| || | || Sbjct 49519 CTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAA 49460 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || | || | || | ||| || | ||| | || |||| ||||| || | Sbjct 49459 GACCATTCGCGCTCAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAA 49400 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 || | |||| |||||||||| | |||| |||||||||||||||||| Sbjct 49399 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAAC 49348 Score = 123 bits (136), Expect = 3e-23 Identities = 303/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||| | || || |||||||| || ||| | ||||| |||||||| Sbjct 48822 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAAC 48763 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || ||| || || ||| Sbjct 48762 AACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 48703 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | | ||| ||| Sbjct 48702 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 48645 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716 | || |||| || || |||| |||||| ||| | ||||| || | Sbjct 48644 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 48588 Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | | | |||||| ||||| ||| || ||||||||| | ||| | | | Sbjct 48587 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 48531 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| |||||||||||||| | ||| || ||||||||||| ||||||||| Sbjct 48530 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 48471 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || | || || ||| |||| | | | |||||||| || |||||| | Sbjct 48470 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 48411 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| || |||||||| ||||| || Sbjct 48410 GTCTCAAGACCGGCATGTACTACCTGCGTAC 48380 >seq911 Length=127146 Score = 102 bits (112), Expect = 9e-17 Identities = 276/420 (66%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || || || ||||| |||| || | ||| || | | ||| || |||| | Sbjct 18861 CCCGTGCCAATACCATCGGCACCATTGATGAGCACCATGGGAAGGACAGGAGCATAAATC 18920 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||||| | ||| | |||||| || | | || |||| | || || | ||| Sbjct 18921 TCCGGCTCAATCTGCTTACCGTCCTCAAACTGGTGGTTCAGGTTTGGATCATC-GAGGGA 18979 Query 151996 TC-GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 ||| || || | | ||| ||| || || ||| | || || | ||||| || Sbjct 18980 GGAGAAAATTGAGCGGGCGAAGGGAGACAAGCGGGTAAAGGTATAACGAGGACTGGCAGC 19039 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| |||||| || || || | ||||| | || |||||| || | |||| ||| Sbjct 19040 ATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTGATGTT 19099 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 |||| ||||| |||| |||||||| | || || |||||| |||||||| Sbjct 19100 ATTGGATCCCACAAAATCTTGAGCCAAGCCAATGATGGTTTGCTGCAGTGAGGCTTCACC 19159 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 |||||| || || ||| | | | || || || |||| || | | ||||| |||| | Sbjct 19160 GTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCTTTTCGTCCTT 19219 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || ||| |||||| ||| ||||| | ||||||||||| || ||||| || || Sbjct 19220 GACCACGTTTCTCTTGAAACATGCGTAGAGAACCTTGCGCTGACCGGGCTTCAACCCATC 19279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 117301 GCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAA 117360 ||| || || | ||||||| || |||||||| |||||| ||||| || | ||| || Sbjct 19010 GCGGGTAAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACCAAA 19069 Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 | || || ||||||| | || | ||| |||| |||||||| | |||||||||| Sbjct 19070 GTTACCGCTGGGCTCCAGAACATTGATGTTATTGGATCCCACAAAATCTTGAGCCAAGCC 19129 Query 117421 GACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 | || || || || || ||||| ||||| || || ||| | | | || || Sbjct 19130 AATGATGGTTTGCTGCAGTGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCAGAGACATA 19189 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 || ||||||| | ||||| ||| |||| || ||| |||||| || || || Sbjct 19190 ACCAGCCAGCTCCACAACCTTTTCGTCCTTGAC--CACGTTTCTCTTGAAACATGCGTAG 19247 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | ||||||||||||| ||||||| ||||| Sbjct 19248 AGAACCTTGCGCTGACCGGGCTTCAACCCATC 19279 Score = 82.4 bits (90), Expect = 8e-11 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | ||||||||||| ||||| ||||| |||| |||||||||||| Sbjct 19760 GTTGATGAGAAGACCCTTGATGTGACTACCGTCGTGATCCTGATCGGCCATGATCATCAG 19819 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGACC-CGTAGACCTTTCCATGTTGAAGCCCGAGGA 152887 ||||||| || ||| | | ||| || ||| |||| || | || || |||| Sbjct 19820 GTGACCGTAACGAAGG-CTTTTTGTGTCCGTGTACACCTGCTTGTGCTTGAGACCCAGGA 19878 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 || |||| ||| | |||| || | ||| | || | | | ||| || || | Sbjct 19879 ACTGCTTGATGTTTTGGATCTCCTGGTTTTTGGTGATTTGGTCGATGGAGGCGTCTCGTA 19938 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGA-ACGCGTTGCGGCCTACAACGCTC 153006 ||||| | |||| || || || || ||||| || | ||| | | || | | |||| Sbjct 19939 CATTGAGAAGCTTACCACGAAGCGGGAACACACCAATACGGTCAGGGTCCAAGATGGCTC 19998 Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCG 153066 | || | || || || |||| || |||||||| ||||| | || ||||| || || Sbjct 19999 -GTCCAGAAACGGCCAGACCTTTGGCGGAGTCACCTTCGGTCAAGATGAGCGTGCATTCA 20057 Query 153067 TGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 ||| || || || ||| ||||||| ||| ||||||||| Sbjct 20058 TGACCGCGTCTGGTGCCTGCCAAGTTGGCCTCGACAAGCTTGG 20100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208790429200