Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq160 241 1e-58
seq911 102 9e-17
>seq160
Length=70483
Score = 241 bits (266), Expect = 1e-58
Identities = 484/712 (68%), Gaps = 12/712 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | ||
Sbjct 50053 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACCCATGCCTCCCC 49997
Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349
|||||||||||||| ||||| || | ||| |||| |||||| |||| | ||
Sbjct 49996 CACCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACAT 49937
Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409
|||||||||| ||||| || ||||| || || || ||| ||||||| || |||||
Sbjct 49936 GAAGGATGACAGCATCGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAA 49877
Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467
| | | ||||||||||| | || || | || ||||||| | |||| | ||
Sbjct 49876 GATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATT 49819
Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527
|| || ||||| | | | || || | || ||||| || || |||||||||||
Sbjct 49818 GCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACT 49759
Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587
||| | || ||| | ||||||||| ||||| || | || |||||||||||||||
Sbjct 49758 GCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAG 49699
Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647
|| |||||||| ||| | | ||||| || || || || ||| || || | ||||||
Sbjct 49698 CCCTGGCACGCTGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAG 49639
Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707
| ||| |||||| |||| ||||| |||||||| || ||||||||| | ||
Sbjct 49638 GTCCGCGCTCGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTT 49579
Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGT 53766
|||||| || ||| ||| || |||||||| ||||| ||||| |||| | | | ||
Sbjct 49578 GAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTG- 49520
Query 53767 CTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAA 53826
||| || |||||||| | | ||||| || ||||| |||| || | ||
Sbjct 49519 CTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGCCGCAA 49460
Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886
|| | || | || | ||| || | ||| | || |||| ||||| || |
Sbjct 49459 GACCATTCGCGCTCAGAAGCTGTGGTATTCCATCTTGGAGGCCCAGACCGAGACTGGTAA 49400
Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|| | |||| |||||||||| | |||| ||||||||||||||||||
Sbjct 49399 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAAC 49348
Score = 123 bits (136), Expect = 3e-23
Identities = 303/451 (67%), Gaps = 19/451 (4%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| | ||||| | || || |||||||| || ||| | ||||| ||||||||
Sbjct 48822 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAAC 48763
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||| || ||| || || |||
Sbjct 48762 AACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 48703
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || ||||||||||| | | | | ||| |||
Sbjct 48702 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 48645
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716
| || |||| || || |||| |||||| ||| | ||||| || |
Sbjct 48644 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 48588
Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775
||| | | | |||||| ||||| ||| || ||||||||| | ||| | | |
Sbjct 48587 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 48531
Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832
||| | ||| |||||||||||||| | ||| || ||||||||||| |||||||||
Sbjct 48530 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 48471
Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892
|||| || | || || ||| |||| | | | |||||||| || |||||| |
Sbjct 48470 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 48411
Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923
| |||||||| || |||||||| ||||| ||
Sbjct 48410 GTCTCAAGACCGGCATGTACTACCTGCGTAC 48380
>seq911
Length=127146
Score = 102 bits (112), Expect = 9e-17
Identities = 276/420 (66%), Gaps = 2/420 (0%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || || || || || ||||| |||| || | ||| || | | ||| || |||| |
Sbjct 18861 CCCGTGCCAATACCATCGGCACCATTGATGAGCACCATGGGAAGGACAGGAGCATAAATC 18920
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
|||||||| | ||| | |||||| || | | || |||| | || || | |||
Sbjct 18921 TCCGGCTCAATCTGCTTACCGTCCTCAAACTGGTGGTTCAGGTTTGGATCATC-GAGGGA 18979
Query 151996 TC-GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054
||| || || | | ||| ||| || || ||| | || || | ||||| ||
Sbjct 18980 GGAGAAAATTGAGCGGGCGAAGGGAGACAAGCGGGTAAAGGTATAACGAGGACTGGCAGC 19039
Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114
||| |||||| || || || | ||||| | || |||||| || | |||| |||
Sbjct 19040 ATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTGATGTT 19099
Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174
|||| ||||| |||| |||||||| | || || |||||| ||||||||
Sbjct 19100 ATTGGATCCCACAAAATCTTGAGCCAAGCCAATGATGGTTTGCTGCAGTGAGGCTTCACC 19159
Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234
|||||| || || ||| | | | || || || |||| || | | ||||| |||| |
Sbjct 19160 GTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCTTTTCGTCCTT 19219
Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
|| ||| |||||| ||| ||||| | ||||||||||| || ||||| || ||
Sbjct 19220 GACCACGTTTCTCTTGAAACATGCGTAGAGAACCTTGCGCTGACCGGGCTTCAACCCATC 19279
Score = 98.7 bits (108), Expect = 1e-15
Identities = 186/272 (68%), Gaps = 4/272 (1%)
Strand=Plus/Plus
Query 117301 GCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAA 117360
||| || || | ||||||| || |||||||| |||||| ||||| || | ||| ||
Sbjct 19010 GCGGGTAAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACCAAA 19069
Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420
| || || ||||||| | || | ||| |||| |||||||| | ||||||||||
Sbjct 19070 GTTACCGCTGGGCTCCAGAACATTGATGTTATTGGATCCCACAAAATCTTGAGCCAAGCC 19129
Query 117421 GACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480
| || || || || || ||||| ||||| || || ||| | | | || ||
Sbjct 19130 AATGATGGTTTGCTGCAGTGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCAGAGACATA 19189
Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538
|| ||||||| | ||||| ||| |||| || ||| |||||| || || ||
Sbjct 19190 ACCAGCCAGCTCCACAACCTTTTCGTCCTTGAC--CACGTTTCTCTTGAAACATGCGTAG 19247
Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| ||||||||||||| ||||||| |||||
Sbjct 19248 AGAACCTTGCGCTGACCGGGCTTCAACCCATC 19279
Score = 82.4 bits (90), Expect = 8e-11
Identities = 227/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828
||||| || | ||||||||||| ||||| ||||| |||| ||||||||||||
Sbjct 19760 GTTGATGAGAAGACCCTTGATGTGACTACCGTCGTGATCCTGATCGGCCATGATCATCAG 19819
Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGACC-CGTAGACCTTTCCATGTTGAAGCCCGAGGA 152887
||||||| || ||| | | ||| || ||| |||| || | || || ||||
Sbjct 19820 GTGACCGTAACGAAGG-CTTTTTGTGTCCGTGTACACCTGCTTGTGCTTGAGACCCAGGA 19878
Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947
|| |||| ||| | |||| || | ||| | || | | | ||| || || |
Sbjct 19879 ACTGCTTGATGTTTTGGATCTCCTGGTTTTTGGTGATTTGGTCGATGGAGGCGTCTCGTA 19938
Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGA-ACGCGTTGCGGCCTACAACGCTC 153006
||||| | |||| || || || || ||||| || | ||| | | || | | ||||
Sbjct 19939 CATTGAGAAGCTTACCACGAAGCGGGAACACACCAATACGGTCAGGGTCCAAGATGGCTC 19998
Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCG 153066
| || | || || || |||| || |||||||| ||||| | || ||||| || ||
Sbjct 19999 -GTCCAGAAACGGCCAGACCTTTGGCGGAGTCACCTTCGGTCAAGATGAGCGTGCATTCA 20057
Query 153067 TGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109
||| || || || ||| ||||||| ||| |||||||||
Sbjct 20058 TGACCGCGTCTGGTGCCTGCCAAGTTGGCCTCGACAAGCTTGG 20100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547208790429200
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