Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq155 102 7e-17 >seq155 Length=71478 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | ||||| | ||| || || |||| || | || | || || | ||| Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 19213 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 19154 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 | ||||| ||||| |||| |||||||||||||| ||||| | ||||| |||||||| Sbjct 19153 GAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 19094 Query 30019 CCCCGACCTCTGGTAGAGCTGACA 30042 | |||| |||||| ||||| || Sbjct 19093 ACAAGACCGCTGGTATAGCTGGCA 19070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/405 (66%), Gaps = 20/405 (5%) Strand=Plus/Minus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| ||||| || || || |||||| |||||| Sbjct 18993 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGC 18937 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGG 30172 || |||||||||| | ||| || | || ||| | || ||||| | || || | Sbjct 18936 GGATTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGATTGTTGCGAAGCTTGTGGATG 18877 Query 30173 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 | |||| |||||| || || ||| | || | |||||| ||| | |||| | Sbjct 18876 ATCTCGGC------CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACG 18823 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || || || |||| |||||| |||||||| || || |||||||| || | || Sbjct 18822 TACTCGGCGCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCG 18763 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | ||| | ||| |||| | || || | ||| || ||| ||||||||||||| Sbjct 18762 CGGTGGGTCAGGCCGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTG 18703 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 30411 || || ||| ||| | |||| |||| ||||| || |||||| || ||||| Sbjct 18702 ACACCGACCTCGTTGAGGGCGAGGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTC 18644 Query 30412 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | | |||||| ||||||| || || ||||| || || Sbjct 18643 GGCGATGACGGCGCGGAGGAAGACCCGTTTTGTTGTGAGCAGAGG 18599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305180688968