Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq378 98.7 6e-16
seq434 89.7 3e-13
>seq378
Length=193057
Score = 98.7 bits (108), Expect = 6e-16
Identities = 105/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536
||| || | |||||||| ||||| || || ||||||||||| |||||||| || || |
Sbjct 156868 GCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCT 156809
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
|| ||| || ||||||| || || ||||| ||||| || || ||||| ||||| ||
Sbjct 156808 CAAGGTG--CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 156751
Query 34597 GGCACTCCCTCCTTGTC 34613
|| | |||||||||||
Sbjct 156750 GGAATGCCCTCCTTGTC 156734
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTT 34561
|| || ||||||||||| |||||||| || || | |||||| || |||| ||||| |
Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTG--CGACCGTCCTCAAGCT 156558
Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621
| ||||| ||||| || | |||||| || ||||| || | ||||||||||| |||
Sbjct 156557 GCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATC 156499
Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680
|||| || || | || |||||| || || |||| || || || || |||
Sbjct 156498 TTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCG 156439
Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || ||||||||
Sbjct 156438 GTCAACGTCTTGACGAAGATCTGCAT 156413
>seq434
Length=177494
Score = 89.7 bits (98), Expect = 3e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||| ||||| || |||||| || ||||| || || || || |||||
Sbjct 69295 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 69354
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| || || || || ||||| |||||||| || | ||||||
Sbjct 69355 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 69414
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| | || || | || ||||| |||||| || | |||
Sbjct 69415 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 69473
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || ||||||||||| |||
Sbjct 69474 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 69516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314725557101582
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |