Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq378 98.7 6e-16 seq434 89.7 3e-13 >seq378 Length=193057 Score = 98.7 bits (108), Expect = 6e-16 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536 ||| || | |||||||| ||||| || || ||||||||||| |||||||| || || | Sbjct 156868 GCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCT 156809 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || ||| || ||||||| || || ||||| ||||| || || ||||| ||||| || Sbjct 156808 CAAGGTG--CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 156751 Query 34597 GGCACTCCCTCCTTGTC 34613 || | ||||||||||| Sbjct 156750 GGAATGCCCTCCTTGTC 156734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTT 34561 || || ||||||||||| |||||||| || || | |||||| || |||| ||||| | Sbjct 156615 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTG--CGACCGTCCTCAAGCT 156558 Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621 | ||||| ||||| || | |||||| || ||||| || | ||||||||||| ||| Sbjct 156557 GCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATC 156499 Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 |||| || || | || |||||| || || |||| || || || || ||| Sbjct 156498 TTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCG 156439 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || |||||||| Sbjct 156438 GTCAACGTCTTGACGAAGATCTGCAT 156413 >seq434 Length=177494 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||||| || |||||| || ||||| || || || || ||||| Sbjct 69295 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 69354 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || || ||||| |||||||| || | |||||| Sbjct 69355 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 69414 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || || | || ||||| |||||| || | ||| Sbjct 69415 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 69473 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | || || || ||||||||||| ||| Sbjct 69474 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 69516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725557101582