Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq155 89.7 5e-13
>seq155
Length=71478
Score = 89.7 bits (98), Expect = 5e-13
Identities = 128/174 (74%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCC 34379
|| || ||||||||||||| | ||||| || || || || |||| ||| || | |
Sbjct 18698 GGTGTCAAGATCTGGGACGGCAATGGGTCCCGCGAGTTCCTCGACA-GCGTCGGCCTGAC 18756
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| | || |||| || ||| ||||||| ||||||||||| |||||| | |||||||| |
Sbjct 18757 CCAC-CGCGAGGTCGGTGACCTGGGCCCCGTCTACGGGTTTCAGTGGCGGCACTTTGGCG 18815
Query 34440 CGGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492
| ||||| || || || || |||||||| | || |||| | |||||||||
Sbjct 18816 CCGAGTA-CGTGGACGCAAAGGCGGACTACGCCGGCAAGGGCGTCGACCAGCTG 18868
Score = 89.7 bits (98), Expect = 5e-13
Identities = 128/174 (74%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCCGATACTCCGCCCCAA 6911
||||||||| | |||| || | |||||||| || || || || ||||| || ||||
Sbjct 18868 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACG-TACTCGGCGCCAA 18810
Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA-- 6969
|||| | |||||| ||||||||||| ||||||| ||| || |||| || | || |
Sbjct 18809 AGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCG-GTGGGTCAGG 18751
Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
|| ||| |||| || || || || ||||| | ||||||||||||| || ||
Sbjct 18750 CCGACGC-TGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACC 18698
Score = 89.7 bits (98), Expect = 5e-13
Identities = 187/274 (68%), Gaps = 15/274 (5%)
Strand=Plus/Plus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||||| || || || || | |||||||| | || | || |||||||| || ||
Sbjct 19069 CTGCCAGCTATACCAGCGGTCTTGTGACATGGGCCTCGGCATCCCCTTCAACATCGCCAG 19128
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754
|| ||||||||||| ||||| ||||||| || ||| | | |||| || || ||
Sbjct 19129 CTATGCTCTGCTCACACACATGCTCGCTCACGT-GTGCGATCTGGTGCCCGGAAGCCTCA 19187
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| ||| |||| || || || ||||| | |||||||||| |||| || ||
Sbjct 19188 CCCA--CGTCATGGGAGACGCACACGTCTACATCGACCACATCGACGCTCTCCAGACACA 19245
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC------CGTCAC 34866
||| | || ||||| || || |||||| |||| | |||| || | || ||
Sbjct 19246 ACTGGAGCGCGAGCCTCGGCCATTCCCCGAGCTGGAGATTACGCGGGAGAAGGGCGGCAG 19305
Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTG 34900
| ||||||| || | | |||||||||||||
Sbjct 19306 C---ATCGATGGCTGGAAGGTCGAGGACTTCGTG 19336
Score = 89.7 bits (98), Expect = 5e-13
Identities = 187/274 (68%), Gaps = 15/274 (5%)
Strand=Plus/Minus
Query 6445 CACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG------GCTCGAATAATTTT 6498
||||||||||||| | | || ||||||| | || || | || |||| |
Sbjct 19336 CACGAAGTCCTCGACCTTCCAGCCATCGAT---GCTGCCGCCCTTCTCCCGCGTAATCTC 19280
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
|||| |||||| || || ||||| || | ||| || || |||| ||||||||||
Sbjct 19279 CAGCTCGGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTC 19220
Query 6559 CAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCA-ACCCCAC 6615
| ||||| || || || |||| ||| || || || || |||| | | |||
Sbjct 19219 GATGTAGACGTGTGCGTCTCCCATGACG--TGGGTGAGGCTTCCGGGCACCAGATCGCAC 19162
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|| ||||||| ||||| ||||||||||| || || || |||||||| || | || |
Sbjct 19161 -ACGTGAGCGAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAG 19103
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|||||||| | || || || || |||||||||
Sbjct 19102 GCCCATGTCACAAGACCGCTGGTATAGCTGGCAG 19069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448256494142880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |