Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq155 89.7 5e-13 >seq155 Length=71478 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCC 34379 || || ||||||||||||| | ||||| || || || || |||| ||| || | | Sbjct 18698 GGTGTCAAGATCTGGGACGGCAATGGGTCCCGCGAGTTCCTCGACA-GCGTCGGCCTGAC 18756 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | || |||| || ||| ||||||| ||||||||||| |||||| | |||||||| | Sbjct 18757 CCAC-CGCGAGGTCGGTGACCTGGGCCCCGTCTACGGGTTTCAGTGGCGGCACTTTGGCG 18815 Query 34440 CGGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 | ||||| || || || || |||||||| | || |||| | ||||||||| Sbjct 18816 CCGAGTA-CGTGGACGCAAAGGCGGACTACGCCGGCAAGGGCGTCGACCAGCTG 18868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | |||| || | |||||||| || || || || ||||| || |||| Sbjct 18868 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACG-TACTCGGCGCCAA 18810 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA-- 6969 |||| | |||||| ||||||||||| ||||||| ||| || |||| || | || | Sbjct 18809 AGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCG-GTGGGTCAGG 18751 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || ||| |||| || || || || ||||| | ||||||||||||| || || Sbjct 18750 CCGACGC-TGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACC 18698 Score = 89.7 bits (98), Expect = 5e-13 Identities = 187/274 (68%), Gaps = 15/274 (5%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || | || |||||||| || || Sbjct 19069 CTGCCAGCTATACCAGCGGTCTTGTGACATGGGCCTCGGCATCCCCTTCAACATCGCCAG 19128 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 || ||||||||||| ||||| ||||||| || ||| | | |||| || || || Sbjct 19129 CTATGCTCTGCTCACACACATGCTCGCTCACGT-GTGCGATCTGGTGCCCGGAAGCCTCA 19187 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || ||| |||| || || || ||||| | |||||||||| |||| || || Sbjct 19188 CCCA--CGTCATGGGAGACGCACACGTCTACATCGACCACATCGACGCTCTCCAGACACA 19245 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC------CGTCAC 34866 ||| | || ||||| || || |||||| |||| | |||| || | || || Sbjct 19246 ACTGGAGCGCGAGCCTCGGCCATTCCCCGAGCTGGAGATTACGCGGGAGAAGGGCGGCAG 19305 Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTG 34900 | ||||||| || | | ||||||||||||| Sbjct 19306 C---ATCGATGGCTGGAAGGTCGAGGACTTCGTG 19336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 187/274 (68%), Gaps = 15/274 (5%) Strand=Plus/Minus Query 6445 CACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG------GCTCGAATAATTTT 6498 ||||||||||||| | | || ||||||| | || || | || |||| | Sbjct 19336 CACGAAGTCCTCGACCTTCCAGCCATCGAT---GCTGCCGCCCTTCTCCCGCGTAATCTC 19280 Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 |||| |||||| || || ||||| || | ||| || || |||| |||||||||| Sbjct 19279 CAGCTCGGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTC 19220 Query 6559 CAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCA-ACCCCAC 6615 | ||||| || || || |||| ||| || || || || |||| | | ||| Sbjct 19219 GATGTAGACGTGTGCGTCTCCCATGACG--TGGGTGAGGCTTCCGGGCACCAGATCGCAC 19162 Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||||||| ||||| ||||||||||| || || || |||||||| || | || | Sbjct 19161 -ACGTGAGCGAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAG 19103 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || || ||||||||| Sbjct 19102 GCCCATGTCACAAGACCGCTGGTATAGCTGGCAG 19069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256494142880