Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq378 158 3e-33 seq434 154 4e-32 seq422 116 9e-21 seq828 107 5e-18 >seq378 Length=193057 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || ||| || || || | ||||| ||| |||||| Sbjct 156634 ACGAAGGCGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGT 156575 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| |||||||| || || || || || |||||||| Sbjct 156574 GCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACC 156515 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || |||||| ||| ||| |||||||||||||| | ||| || || || Sbjct 156514 CTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAA 156455 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 156454 TGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| || || || |||| ||||| |||| | |||| ||||| Sbjct 156396 AGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 156337 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| ||||| || ||||| || || ||||| ||||| || Sbjct 156336 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 156277 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | ||||| || | ||||| ||| Sbjct 156276 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 156217 Query 225682 TTGCCCGT 225689 || || || Sbjct 156216 TTTCCAGT 156209 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| || ||| || || || | ||||| ||| ||| || Sbjct 156862 ACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGT 156803 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 156802 GCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 156743 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||||||||| || | |||||| || | Sbjct 156742 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAG 156683 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| ||| || | ||| | |||||| Sbjct 156682 GGTGATTGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 >seq434 Length=177494 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| || || || || |||| ||||| |||| | || Sbjct 69291 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 69350 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| || Sbjct 69351 TCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 69410 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 69411 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 69470 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 69471 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 69515 >seq422 Length=18081 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||| ||||| Sbjct 4400 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4341 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 4340 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4281 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 4280 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4222 >seq828 Length=2681 Score = 107 bits (118), Expect = 5e-18 Identities = 197/283 (70%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTATAAG 7505 || |||||||||| ||||| || ||||| ||| || ||||| | | ||||| Sbjct 1551 TACTTAATATTTGCCCTATTTTCAGG-ATTATTAGGAACAGCCTTTTCAGTATTAATAAG 1609 Query 7506 GTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 |||||| |||| || || ||| |||| || | || |||| |||| | || ||| Sbjct 1610 ATTAGAACTTAG-TGGACCTGGTGTTCAA---TTTATTGCAAATAACCAATTATATAACA 1665 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 ||| || || || || || | | ||||| ||||| | |||||||| | | || | Sbjct 1666 GTATCATAACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCATTAATCG 1725 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || || ||||||| || | ||||||||||| || | ||||||||||| || || | Sbjct 1726 GAGGATTTGGAAATTTCTTAATGCCTTTAATGATAGGAGGACCTGATATGGCATTCCCTA 1785 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| ||||| |||||| |||| ||| ||||| Sbjct 1786 GATTAAATAATATTAGTTTCTGATTATTACCACCTAGTTTATT 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192515095611476