Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq155 107 2e-18 >seq155 Length=71478 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | | Sbjct 19357 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 19298 Query 29590 C--CTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 | |||| | || ||| || ||| || || | ||||| | ||| || || || Sbjct 19297 CTTCTCCCGCGTAATCTCCAGCTCGGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTG 19238 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| | |||| | ||| Sbjct 19237 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCC 19178 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | || || |||||||| | ||||| ||||| |||| |||||||||||||| Sbjct 19177 GGGCACCAGATCGCACACGTGAGCGAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTT 19118 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | ||||| |||||||| | |||| |||||| |||||||| Sbjct 19117 GAAGGGGATGCCGAGGCCCATGTCACAAGACCGCTGGTATAGCTGGCA 19070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406157982579844