Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq155 107 1e-18
seq301 82.4 6e-11
>seq155
Length=71478
Score = 107 bits (118), Expect = 1e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164
||| || || | ||||| | ||| || || |||| || | || | ||| || | |||
Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214
Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224
|||||| |||||||||| | |||| | ||| || | || || ||||||||
Sbjct 19213 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 19154
Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284
| ||||| ||||| |||| |||||||||||||| ||||| | ||||| ||||||||
Sbjct 19153 GAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 19094
Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308
| |||| |||||| ||||| ||
Sbjct 19093 ACAAGACCGCTGGTATAGCTGGCA 19070
Score = 89.7 bits (98), Expect = 4e-13
Identities = 250/382 (65%), Gaps = 14/382 (4%)
Strand=Plus/Minus
Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407
|||||| || || || |||||| |||||| || |||||||||| | ||| ||
Sbjct 18973 GTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGATTCCAGGCGCTGAGGATCAT 18914
Query 27408 GCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461
| || ||| | || ||||| | || || | | |||| |||||| ||
Sbjct 18913 TCTCCGGTCGTAAGGATTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGTC 18860
Query 27462 CACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521
|| ||| | || | |||||| || | |||| |||||| || || || |||| |||
Sbjct 18859 GACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCA 18800
Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581
|| |||||||| || || |||||||| || | || | ||| | ||| ||||
Sbjct 18799 CTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTC 18740
Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641
| || || | ||| || ||| ||||||||||||| || || |||| ||| |
Sbjct 18739 GAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTTGAGGGCGAG 18680
Query 27642 GGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700
|||| |||| ||||| || |||||| || ||||| | | |||||| ||||
Sbjct 18679 GGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAGA 18621
Query 27701 CCCTCTTGGTCGTGAGGAGGGG 27722
||| || || ||||| || ||
Sbjct 18620 CCCGTTTTGTTGTGAGCAGAGG 18599
>seq301
Length=211668
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/146 (75%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603
|||| || |||||||| || || | |||||| |||||||| || ||| | | ||
Sbjct 152393 AGATTGGAGACAAGTTCGCCTCTCGTCACGGT-CAAAAGGGCACTATTGGTGT--TACTT 152449
Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAAC 48660
||| || ||||||||||||||| ||||| || || || || ||| |||||||||||
Sbjct 152450 ACCGACAAGAGGACATGCCCTTC-ACAAGAGAAGGTGTCACTCCAGACATCATCATCAAC 152508
Query 48661 CCCCACGCCTTTCCCTCCAGGATGAC 48686
|| |||||| |||| ||| | |||||
Sbjct 152509 CCTCACGCCATTCCATCCCGTATGAC 152534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369502453449074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |