Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq155 107 1e-18 seq301 82.4 6e-11 >seq155 Length=71478 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||| || || | ||||| | ||| || || |||| || | || | ||| || | ||| Sbjct 19273 GGGGAATGGCCGAGGCTCGCGCTCCAGTTGTGTCTGGAGAGCGTCGATGTGGTCGATGTA 19214 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 19213 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 19154 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| ||||| |||| |||||||||||||| ||||| | ||||| |||||||| Sbjct 19153 GAGCATGTGTGTGAGCAGAGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 19094 Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308 | |||| |||||| ||||| || Sbjct 19093 ACAAGACCGCTGGTATAGCTGGCA 19070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 250/382 (65%), Gaps = 14/382 (4%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || |||||| |||||| || |||||||||| | ||| || Sbjct 18973 GTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGATTCCAGGCGCTGAGGATCAT 18914 Query 27408 GCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461 | || ||| | || ||||| | || || | | |||| |||||| || Sbjct 18913 TCTCCGGTCGTAAGGATTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGTC 18860 Query 27462 CACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521 || ||| | || | |||||| || | |||| |||||| || || || |||| ||| Sbjct 18859 GACGCCCTTGCCGGCGTAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCA 18800 Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581 || |||||||| || || |||||||| || | || | ||| | ||| |||| Sbjct 18799 CTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTC 18740 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 | || || | ||| || ||| ||||||||||||| || || |||| ||| | Sbjct 18739 GAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACACCGACCTCGTTGAGGGCGAG 18680 Query 27642 GGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 |||| |||| ||||| || |||||| || ||||| | | |||||| |||| Sbjct 18679 GGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAGA 18621 Query 27701 CCCTCTTGGTCGTGAGGAGGGG 27722 ||| || || ||||| || || Sbjct 18620 CCCGTTTTGTTGTGAGCAGAGG 18599 >seq301 Length=211668 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/146 (75%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| || |||||||| || || | |||||| |||||||| || ||| | | || Sbjct 152393 AGATTGGAGACAAGTTCGCCTCTCGTCACGGT-CAAAAGGGCACTATTGGTGT--TACTT 152449 Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAAC 48660 ||| || ||||||||||||||| ||||| || || || || ||| ||||||||||| Sbjct 152450 ACCGACAAGAGGACATGCCCTTC-ACAAGAGAAGGTGTCACTCCAGACATCATCATCAAC 152508 Query 48661 CCCCACGCCTTTCCCTCCAGGATGAC 48686 || |||||| |||| ||| | ||||| Sbjct 152509 CCTCACGCCATTCCATCCCGTATGAC 152534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502453449074