Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq160 172 8e-38
>seq160
Length=70483
Score = 172 bits (190), Expect = 8e-38
Identities = 445/673 (66%), Gaps = 4/673 (1%)
Strand=Plus/Plus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATCTTCCTTAACTCGTTTCAT 78013
||||||||||| || |||||||| | | |||||| | ||||| | ||| || |||||
Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTCAT 49590
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
|||||||| || ||||| ||||||| || | || || | | ||||| || ||
Sbjct 49591 GAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCC 49650
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
||||| ||||| || ||||| | | |||| ||||| || || || || ||
Sbjct 49651 GTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGAT 49710
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | ||||| || || ||||| |||||||| | ||||||||| ||||| || |
Sbjct 49711 GGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAA 49770
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|||| | ||| ||||||||||||||||| || || || || |||| ||| ||| ||
Sbjct 49771 CACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 49830
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
| || || || | | | || || || || |||||||| || || | ||
Sbjct 49831 GGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 49890
Query 78314 GCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372
| |||| |||| || || ||||||||||| || ||||||||| |||||| | | |
Sbjct 49891 AC-ACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGA 49949
Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432
| || |||| || || || || || || || | || || || ||||| |
Sbjct 49950 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGG 50009
Query 78433 TAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGAT 78492
| || | || ||| | || |||||||| || | | || ||||| |
Sbjct 50010 TGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCC 50069
Query 78493 GAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTA 78552
|| || || | || ||||| | ||| ||||| |||| ||||| |||| || |
Sbjct 50070 AGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAA 50129
Query 78553 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 78612
|||| | ||||||| |||||||| || || || || || | ||| |||||||
Sbjct 50130 GCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 50189
Query 78613 TCTCGTAAATAAT 78625
||||| | |||
Sbjct 50190 GATCGTAGACAAT 50202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694659647738560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |