Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq160 172 8e-38 >seq160 Length=70483 Score = 172 bits (190), Expect = 8e-38 Identities = 445/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATCTTCCTTAACTCGTTTCAT 78013 ||||||||||| || |||||||| | | |||||| | ||||| | ||| || ||||| Sbjct 49532 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTCAT 49590 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 |||||||| || ||||| ||||||| || | || || | | ||||| || || Sbjct 49591 GAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCC 49650 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||||| ||||| || ||||| | | |||| ||||| || || || || || Sbjct 49651 GTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGAT 49710 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | ||||| || || ||||| |||||||| | ||||||||| ||||| || | Sbjct 49711 GGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAA 49770 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||| | ||| ||||||||||||||||| || || || || |||| ||| ||| || Sbjct 49771 CACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 49830 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | || || || | | | || || || || |||||||| || || | || Sbjct 49831 GGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 49890 Query 78314 GCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 | |||| |||| || || ||||||||||| || ||||||||| |||||| | | | Sbjct 49891 AC-ACGTCTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGA 49949 Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432 | || |||| || || || || || || || | || || || ||||| | Sbjct 49950 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGG 50009 Query 78433 TAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGAT 78492 | || | || ||| | || |||||||| || | | || ||||| | Sbjct 50010 TGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCC 50069 Query 78493 GAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTA 78552 || || || | || ||||| | ||| ||||| |||| ||||| |||| || | Sbjct 50070 AGATACCAACAGACACTCGCATGATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAA 50129 Query 78553 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 78612 |||| | ||||||| |||||||| || || || || || | ||| ||||||| Sbjct 50130 GCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 50189 Query 78613 TCTCGTAAATAAT 78625 ||||| | ||| Sbjct 50190 GATCGTAGACAAT 50202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659647738560