Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq434 123 6e-23
seq378 107 4e-18
>seq434
Length=177494
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || |||||||| || ||||||||||| |||| | |||| |||||
Sbjct 69301 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 69360
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| | | ||||||||||| | || || ||||| ||
Sbjct 69361 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 69420
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 69421 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 69480
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| |||||||| ||||| ||||| | |||||| || ||
Sbjct 69481 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 69518
>seq378
Length=193057
Score = 107 bits (118), Expect = 4e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||||||||| || ||||||||||| || ||||||||||| |||| | ||||
Sbjct 156403 GAGACGGAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 156344
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || |||||||| || | ||||||||| | | ||| || ||
Sbjct 156343 GCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTC 156284
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | | || || ||| || || || ||
Sbjct 156283 CTTATCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGT 156224
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
|| || || || ||||| ||||| ||||
Sbjct 156223 GATGGTCTTTCCAGTGAGGGTCTTGACGA 156195
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || ||||| || ||||||||||| |||| | ||||| |||||
Sbjct 156111 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATC 156052
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || ||||| || || | ||||||||| | | || || ||||| ||
Sbjct 156051 CTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 155992
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | | | || ||| ||| || || || || || ||
Sbjct 155991 CTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGT 155932
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||| ||||||| |||||
Sbjct 155931 CTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 155899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153805218371234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |