Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq434 141 7e-29 seq378 141 7e-29 seq422 113 3e-20 >seq434 Length=177494 Score = 141 bits (156), Expect = 7e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || || |||||| ||||||||||| |||| | Sbjct 69286 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 69345 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || || |||||||| |||||||| || | || Sbjct 69346 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 69405 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 69406 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 69463 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || |||||||| |||||||||||||| ||||| || ||||| Sbjct 69464 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 69512 >seq378 Length=193057 Score = 141 bits (156), Expect = 7e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||||||||||| || |||||||| ||| | || || || |||| || Sbjct 156849 ACCAAGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTG-CGACCGTCTTC 156791 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || ||||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 156790 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 156731 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||||| ||||||||||| | || || ||||| Sbjct 156730 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 156671 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| |||||||| Sbjct 156670 GCCGGTCAGAGTCTTAACGAAAATTTGCAT 156641 Score = 136 bits (150), Expect = 3e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||||||||||| || |||||||| ||| | ||| |||| || Sbjct 156621 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCA 156562 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||||||| | ||| | ||| ||||| ||| Sbjct 156561 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 156502 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | ||||| ||||||| || || |||| Sbjct 156501 ATCTTTGACTTGACATTGT--CGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCT 156444 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| |||||||| ||||| Sbjct 156443 TGCCGGTCAACGTCTTGACGAAGATCTGCAT 156413 Score = 131 bits (144), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||||||| || ||| |||||| ||||||||||| |||| ||||| | || | || | Sbjct 156107 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG-GC-CATCCT 156050 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || || |||| ||||||||| || | ||| | || ||||| ||| Sbjct 156049 CGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCT 155990 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || ||||| | || || |||| Sbjct 155989 GGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCT 155930 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || ||||||||||| ||||||||||||||| || Sbjct 155929 TGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTG 155895 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| ||| || | || || Sbjct 156393 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 156334 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 156333 AGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 156274 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || |||||||| | || || |||||| Sbjct 156273 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTT 156214 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 156213 CCAGTGAGGGTCTTGACGA 156195 >seq422 Length=18081 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| || ||||||| Sbjct 4402 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 4343 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 4342 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4283 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 4282 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 4225 Query 44326 GAA 44328 ||| Sbjct 4224 GAA 4222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985775698318