Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq378 152 1e-31
seq434 147 5e-30
seq422 131 4e-25
>seq378
Length=193057
Score = 152 bits (168), Expect = 1e-31
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| ||||| || ||||||||||||||||| || || |||||||
Sbjct 156195 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 156254
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| ||||| || || || |||||||| |||||||| ||||| |
Sbjct 156255 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGA 156314
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || || ||||| || ||||| | || || |||| || ||| |||| || |
Sbjct 156315 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 156374
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || |||||
Sbjct 156375 AGTCTACTCTCCACCTTGT 156393
Score = 145 bits (160), Expect = 2e-29
Identities = 160/209 (77%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || || || |||||||||||||||||| || |||
Sbjct 156644 CAAATTTTCGTTAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCCGAC 156703
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 156704 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 156763
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || || || ||||| ||||| || | || |||| ||| || ||| |
Sbjct 156764 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCAC-CTTGAGCGACTACAACAT 156822
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || |||||||| |||| ||
Sbjct 156823 TCAGAAGGAGAGCACACTGCA-CTTGGTT 156850
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || |||||||||||||| || || ||
Sbjct 155902 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAT 155961
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || || ||||| ||||||||
Sbjct 155962 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 156021
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || || ||||| ||||| | ||||| |||| || ||| ||
Sbjct 156022 CGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 156081
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 156082 CAGAAGGAGTCCACCCTCCACCTGGT 156107
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| | ||||| ||| ||||||
Sbjct 156416 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCAGAC 156475
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||||||||||||| || || || |||||||| |||||
Sbjct 156476 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAG 156535
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || ||||| || || || | ||| | ||| || ||| |
Sbjct 156536 CGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACTTTGAGCGACTACAACATT 156595
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || |||||
Sbjct 156596 CAGAAGGAGAGCACACTTCACCTTGT 156621
>seq434
Length=177494
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 69509 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 69450
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || |||||||||||
Sbjct 69449 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 69390
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||| || || ||||| || ||||| | || || |||| || ||| ||
Sbjct 69389 CGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAACATC 69330
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 69329 CAGAAGGAGTCTACCCTCCACCTGGT 69304
>seq422
Length=18081
Score = 131 bits (144), Expect = 4e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||| ||||| || ||| ||||| ||
Sbjct 4221 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 4280
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || ||||||||||| ||| |
Sbjct 4281 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 4340
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || |||||||| ||||| | || ||| |||| || ||| |||| ||
Sbjct 4341 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAA 4400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203714944362476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |