Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=5759010 Score = 221 bits (244), Expect = 1e-52 Identities = 538/821 (66%), Gaps = 82/821 (10%) Strand=Plus/Minus Query 145518 CTTCCCCTCTCCC--CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGG 145575 ||||| ||||| | ||| |||||| | ||| | ||||||||| | ||||||| Sbjct 4488465 CTTCCTCTCTCACAGCCCGGTTAGACGGACATGTTCATGGGGATCGATTTATGGGGGTCA 4488406 Query 145576 TAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG 145635 || |||| | |||||||||| || | || | || ||| | || ||| || | Sbjct 4488405 TATCCCTTGACGACAAAGTCCTCGACCTTCCAGCCGTCGATG-CTGCCGCCCTTTTCCCG 4488347 Query 145636 ----ATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCT 145690 ||| ||| ||| || ||||| || ||| | || ||||| ||| |||| | Sbjct 4488346 CGTAATCTCCAGCTCGGGGAACGGCCGCGG-CTCGCGCTCGAGCTGTGTCTTAAGGGCAT 4488288 Query 145691 CCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGA 145750 | | ||||| || ||||||||| ||||| |||| |||||| ||| | || ||| | | Sbjct 4488287 CGATGTGGTCGATGTAGACGTGGGCGTCTCCCATGACGTGTGTGAGGCTTCCCGGCACCA 4488228 Query 145751 GGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCA 145810 || | | |||||||| ||||| || || || | |||||| || ||||||||||| | Sbjct 4488227 GGTCGCACACGTGGGCGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGA 4488168 Query 145811 CCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG------------------- 145851 || || |||||||| | || |||||||| ||||||||| Sbjct 4488167 TGCCGAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAGTGGAGGTGGCCCTTTGGCT 4488108 Query 145852 -----------GAGAGCTC--------------CCCGCCCGCC-------------ACGT 145873 ||| |||| |||| |||| |||| Sbjct 4488107 TGTTCTCCTCCGAGGGCTCGGGGGCGTCGACGCCCCGGCCGCGGCCCGGGTACGAGACGT 4488048 Query 145874 AGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCC 145933 |||||||| | | |||||| ||||||||||||||| | ||| |||||||| Sbjct 4488047 AGAACTGGGCGAACATGTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCGCGGGTTCC 4487988 Query 145934 AGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCT------CTTGATCTCCCCTATCA 145987 | ||| |||||| | || |||| | |||||| | |||| | | ||| Sbjct 4487987 ACGCGCTGAGGATCATCCGCCTGTCGTAGGGGTTGGTGCGCAGCTTG---TGGACGATCT 4487931 Query 145988 GGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGG 146047 | || |||||||| || |||| ||| ||| || | || ||| |||||| ||| Sbjct 4487930 CGGCC---AGCTGGTCGACACCCTTGCCCGTGTAGTCAGCGCCGGCGTCGACGTACTCGG 4487874 Query 146048 CCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCC 146107 | || ||||||| ||||||||| ||||||||||| |||||||| ||| || | |||| Sbjct 4487873 CGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCG 4487814 Query 146108 CCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC-- 146165 ||| ||| | | | ||||||| || ||||| |||||| ||||||||||||||||||| Sbjct 4487813 TCAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGA 4487754 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 | |||| ||| | | ||||| ||| ||| |||||||||||| ||||| ||| Sbjct 4487753 CGTCGCTGAGGG--CCTTGGACGAGGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGAC 4487696 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| | | |||||| | ||| ||||| || ||||||| Sbjct 4487695 GACGGCGCGGAGGAAGACACGCTTCGTGGTGAGGAGGGGGA 4487655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076704112520