Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 426 2e-114 seq2 149 6e-31 seq3 120 3e-22 >seq7 Length=2761852 Score = 426 bits (472), Expect = 2e-114 Identities = 582/807 (72%), Gaps = 13/807 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | |||||| Sbjct 1550818 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGACCTG 1550877 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 1550878 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 1550937 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| ||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1550938 CACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 1550997 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 1550998 TTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 1551057 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | ||| ||| ||||||||||| ||| | | || | | Sbjct 1551058 GAGAACATACACTCCGAGACGTACTCGCTGCTCATCGACACTTACATCAAGGAGCACAGC 1551117 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | |||| | | | | ||||| || ||||| || || ||| || ||||||| Sbjct 1551118 CA--GCGCAGCTACCTCT--TCAACGCGATTGAGACCATTCCTTGCATCCGCAAGAAGGC 1551173 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | || |||||| | || | || |||| | | |||||||||| || Sbjct 1551174 TGACTGGGCTATCCGATGGATCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTGC 1551233 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||||||||| ||||||| || || ||| |||| || |||||||| Sbjct 1551234 CTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 1551293 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || ||||||||||||||||| || ||||||||||||||| | |||||||| Sbjct 1551294 GAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACGAGGG 1551353 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 |||||| ||||||||||| ||||| | || || | | || | ||| || Sbjct 1551354 TCTGCACACGGACTTTGCCTGCCTGCTGCACTCCCACCTGAAGAACCGCGCCAGCAAGGA 1551413 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || | || ||| |||||||||| ||| |||||||||| ||||| ||||| || Sbjct 1551414 GGTGATCCGCGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTCCTGACCGAGGC 1551473 Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||| |||| ||||||||| | || | | | |||| ||| ||||| || || | Sbjct 1551474 CCTGCC-TTGCGCTCTGCTGGGCATGAACTCCAACCTGATGAAGCAGTACATTGAATTTG 1551532 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | |||||| ||| || | | || ||| ||||| || ||||||| Sbjct 1551533 TTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCAACCCCT 1551592 Query 117408 TGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||||||| | ||||||| ||| Sbjct 1551593 TTGACTTTATGGAGAACATCTCCCTGG 1551619 >seq2 Length=5759010 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 3574375 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3574434 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| |||| Sbjct 3574435 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 3574493 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 3574494 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 3574553 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || ||||| || | || || Sbjct 3574554 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3574604 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| | || |||||| | || Sbjct 4160270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCC 4160211 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||||||||| || ||| ||||||| Sbjct 4160210 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 4160152 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 4160151 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAA 4160092 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 4160091 CATTCAGAAGGAGAGCACCCTGCA 4160068 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| ||||| |||||||| || | |||||| Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || || | || |||||| ||||||||| Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 4160604 ATCCAGAAGGAGTCTACCCTTCACCTTGT 4160576 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || || || | || || ||| | | Sbjct 4160042 ATGCAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 4159983 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 4159982 GATACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 4159924 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || || |||||||| |||| || || || | ||||||||| Sbjct 4159923 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAA 4159864 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||| |||||||| || Sbjct 4159863 CATCCAGAAGGAGAGCACTCTGCATCTGGT 4159834 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| || || || |||| || || || | |||| | | Sbjct 4160488 TCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCG 4160429 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| |||||||| || | |||||||| || ||| Sbjct 4160428 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTC 4160370 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| || |||||| |||||||||||||||||| Sbjct 4160369 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAG 4160310 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 4160309 GAGTCCACACTCCACCTCGT 4160290 >seq3 Length=4316785 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 838276 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 838217 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 838216 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 838157 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || ||||| ||||||||||||||||||| Sbjct 838156 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 838097 Query 40879 G 40879 | Sbjct 838096 G 838096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219116276880