Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 8e-29
seq3 93.3 4e-14
>seq2
Length=5759010
Score = 141 bits (156), Expect = 8e-29
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || | || || |||||||||||| ||||||
Sbjct 4160588 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 4160647
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||||||||||||||| || ||||| |||||||||||||| ||| || ||
Sbjct 4160648 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 4160707
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| | ||||||||||| ||| | || |||||||| || ||
Sbjct 4160708 ACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160767
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 4160768 TTGACGAAGATCTGCATG 4160785
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||| || || |||||||| ||||||| ||||| |||||||
Sbjct 3574586 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 3574527
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 3574526 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3574467
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 3574466 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 3574407
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||||||||
Sbjct 3574406 CCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| ||| ||||| || || |||||||| || | || || ||||| |||||
Sbjct 4160295 GTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTG 4160354
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| ||||| |||||||||||||||| || ||||| |||||||||||||| || ||
Sbjct 4160355 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 4160414
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | | ||| ||||||| || | ||| ||||||||
Sbjct 4160415 GGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTGCCGGT 4160474
Query 118715 CAGAGTTTTTAC 118726
||| || || ||
Sbjct 4160475 CAGGGTCTTGAC 4160486
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||| || ||||||||||| ||||||| |||||| || ||
Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 4160121
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | || || |||||||| || || || || ||||| |||||
Sbjct 4160122 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 4160181
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||| || | || | |||||||| | ||| | || ||
Sbjct 4160182 ATCTTGGACTTGACGTTGTCGATGGTATCGGATGAT-TCGACCTCCAGGGTGATAGTCTT 4160240
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || ||||||||
Sbjct 4160241 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || || |||||||| ||||||| ||| || || || ||||| || |||||| |
Sbjct 4159851 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAA 4159910
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
|| || |||||||| || ||||| || ||||||||||| ||| || || || |
Sbjct 4159911 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTT 4159970
Query 118667 TTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725
|||| ||| || | || | || || || | || | ||| || || ||||| || || |
Sbjct 4159971 GTCGATGGTATCAGATGAT-TCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAA 4160029
Query 118726 CAAAAATCTGCAT 118738
| || ||||||||
Sbjct 4160030 CGAAGATCTGCAT 4160042
>seq3
Length=4316785
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || || || |||||||||||| || |||||| ||||
Sbjct 838098 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 838157
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || || || |||||||||||||| || || || || | |||
Sbjct 838158 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 838217
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||| | | ||||||||| | ||| | || ||||| ||||| || || || ||
Sbjct 838218 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 838276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830331264996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |