Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 105 1e-17 >seq7 Length=2761852 Score = 105 bits (116), Expect = 1e-17 Identities = 268/403 (67%), Gaps = 16/403 (4%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| || | ||||| | ||| || | ||| | | ||||| ||||| ||| Sbjct 710977 CTCGACTCCGCCATCGTCTACGACCGAGACTTCAACTACCAATACTTTGGCTTCAAGACG 710918 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| ||| || |||||||| | || |||||||| || || || ||||||||| Sbjct 710917 CTGGAGCGATCATACCTCCTCAAGCTCGACGGCAAGATTGTCGAGCGGCCACAGCACATG 710858 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||||||||| || || || || ||||| ||| | || |||||||| ||| Sbjct 710857 ATCATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTTCTCGAGACATAC 710798 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | || | || |||||| | || || |||||||| || ||| Sbjct 710797 CACCTCATGTCCAGCAAGTTCT---TCACCCATGCCTCCCCCACCCTCTTCAATGCTGGT 710741 Query 249019 ACCGTCAACAA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCG 249076 ||| | ||| |||||| ||| ||||| || | | |||| | |||||| | | Sbjct 710740 ACC--CCGCAAGCCCAGCTGTCCTCATGCTTCCTGGTCGACATGAAGGACGACAGCATTG 710683 Query 249077 ACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAA 249133 | || || || ||||| || | ||||| || | ||| || || | || || || | Sbjct 710682 AGGGTATCTACGACACTCTGA---AGACGTGTGCCATGATCTCCAAGATGGCTGGTGGTA 710626 Query 249134 TCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 | ||| | |||| | |||||| || | || || ||||| Sbjct 710625 TTGGTTTGAACGTCCACCGCATCCGTGCCACCGGCTCCTACAT 710583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766221150784