Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 >seq7 Length=2761852 Score = 118 bits (130), Expect = 1e-21 Identities = 355/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||||||||||||| | || | ||||| ||||| || || |||||||| || || Sbjct 1551360 GTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1551301 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 1551300 CCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 1551241 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 33772 |||||||||| || | || || | || | |||| || ||||| ||| Sbjct 1551240 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATCCATCGGATAGC 1551181 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| || |||||||| | ||||| || || || || || || ||||| ||| | Sbjct 1551180 CCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAGCTGCG 1551121 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 | | || || | ||||| ||||| | || ||| | || || || ||||| Sbjct 1551120 CTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTT 1551061 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | |||||||| |||||| || || | Sbjct 1551060 CTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCT 1551001 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | | || || || || || || || ||| || || || |||| | Sbjct 1551000 GAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGAT 1550941 Query 34013 ATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || || || || || ||||| | || | | | || ||||| || | | || | Sbjct 1550940 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGGTCCT 1550882 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1550881 TGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 1550822 Query 34129 AGAT 34132 |||| Sbjct 1550821 AGAT 1550818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817497654640