Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 100 4e-16 >seq7 Length=2761852 Score = 100 bits (110), Expect = 4e-16 Identities = 351/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | || | ||||||||||| || || |||||||| || || Sbjct 1551360 GTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1551301 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 1551300 CCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 1551241 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGC 36348 |||||||||| || | || || | || |||| || ||||| ||| Sbjct 1551240 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATCCATCGGATAGC 1551181 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| || |||||||| | ||||| || ||||| || || || ||||| ||| | Sbjct 1551180 CCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAGCTGCG 1551121 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | | || || | || || || || | || ||| | || || || ||||| Sbjct 1551120 CTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTT 1551061 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || || || || || |||||||| || | |||||||| |||||| || || | Sbjct 1551060 CTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCT 1551001 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 || || || | | || || || || || ||||| ||| || || || |||| | Sbjct 1551000 GAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGAT 1550941 Query 36589 ATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || || || || || |||| | || | | | || ||||| || | | || | Sbjct 1550940 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGGTCCT 1550882 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1550881 TGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 1550822 Query 36705 AGAT 36708 |||| Sbjct 1550821 AGAT 1550818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172693046920