Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 1e-14
seq7 84.2 2e-11
>seq2
Length=5759010
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || || ||||| || ||||||| |||| || |||||||| || || ||| |
Sbjct 3574569 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 3574510
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
|||||| || ||||| || || || ||||| || ||||| ||| || || | |
Sbjct 3574509 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3574450
Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752
|| | ||||||| | ||||||||||| ||| | |||||| || || | || || ||
Sbjct 3574449 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 3574390
Query 139753 GAATATTTGCAT 139764
||| || |||||
Sbjct 3574389 GAAAATCTGCAT 3574378
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| |||||||| || || ||||| || || | || | || ||||||||
Sbjct 4160581 GTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTG 4160640
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| ||||| |||| ||||| ||||| || ||||| ||||| || ||||| ||| | |
Sbjct 4160641 CTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCT 4160699
Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | || | | || | ||||||| | ||| ||||| | ||| | ||||||||||
Sbjct 4160700 TGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGG 4160759
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | || || ||||| || |||||
Sbjct 4160760 TGAGGGTCTTGACGAAGATCTGCAT 4160784
>seq7
Length=2761852
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
||||||| |||| | |||| || | ||||| |||| ||| ||||| | |||||
Sbjct 1551134 TCAACGCGATTGAGACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGA 1551193
Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651
|| | || | || || | |||||| | || ||||| || ||||| || || |||
Sbjct 1551194 TCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTA 1551253
Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711
| || || ||| ||||| | || || | |||| | ||| | |||||||
Sbjct 1551254 TCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCG 1551313
Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771
|||| || ||| ||||||| | || ||||| ||||| || ||||||| || ||||| |
Sbjct 1551314 GCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCT 1551373
Query 52772 G 52772
|
Sbjct 1551374 G 1551374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063919389600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |