Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq7 84.2 2e-11 >seq2 Length=5759010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| || ||||||| |||| || |||||||| || || ||| | Sbjct 3574569 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 3574510 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 |||||| || ||||| || || || ||||| || ||||| ||| || || | | Sbjct 3574509 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3574450 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| | ||||||||||| ||| | |||||| || || | || || || Sbjct 3574449 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 3574390 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 3574389 GAAAATCTGCAT 3574378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || || ||||| || || | || | || |||||||| Sbjct 4160581 GTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTG 4160640 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| ||||| || ||||| ||||| || ||||| ||| | | Sbjct 4160641 CTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCT 4160699 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | || | | || | ||||||| | ||| ||||| | ||| | |||||||||| Sbjct 4160700 TGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGG 4160759 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || ||||| || ||||| Sbjct 4160760 TGAGGGTCTTGACGAAGATCTGCAT 4160784 >seq7 Length=2761852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| |||| | |||| || | ||||| |||| ||| ||||| | ||||| Sbjct 1551134 TCAACGCGATTGAGACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGA 1551193 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | || | || || | |||||| | || ||||| || ||||| || || ||| Sbjct 1551194 TCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTA 1551253 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || || ||| ||||| | || || | |||| | ||| | ||||||| Sbjct 1551254 TCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCG 1551313 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771 |||| || ||| ||||||| | || ||||| ||||| || ||||||| || ||||| | Sbjct 1551314 GCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCT 1551373 Query 52772 G 52772 | Sbjct 1551374 G 1551374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063919389600