Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 5e-15
>seq7
Length=2761852
Score = 96.9 bits (106), Expect = 5e-15
Identities = 349/544 (64%), Gaps = 8/544 (1%)
Strand=Plus/Minus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
|||||||||||| || | || | ||||||||||| || || |||||||| || ||
Sbjct 1551360 GTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 1551301
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 1551300 CCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 1551241
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGC 42255
|||||||||| || | || || | || |||| || ||||| |||
Sbjct 1551240 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATCCATCGGATAGC 1551181
Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315
||| || |||||||| | ||||| || || || || || || ||||| ||| |
Sbjct 1551180 CCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAGCTGCG 1551121
Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
| | || || | || || ||||| | || ||| | || || || |||||
Sbjct 1551120 CTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTT 1551061
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
|| || ||||| || |||||||| || | ||||||| || ||| || || |
Sbjct 1551060 CTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCT 1551001
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495
|| || || | | || ||||| || || ||||| ||| || || || |||| |
Sbjct 1551000 GAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGAT 1550941
Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551
|| || || || || |||| | ||| | || ||||| || | | || |
Sbjct 1550940 GTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTCCT 1550882
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | || | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 1550881 TGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 1550822
Query 42612 AGAT 42615
||||
Sbjct 1550821 AGAT 1550818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139090939880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |