Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7 268 1e-66
seq2 84.2 3e-11
>seq7
Length=2761852
Score = 268 bits (296), Expect = 1e-66
Identities = 575/848 (68%), Gaps = 31/848 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | || |||
Sbjct 1550818 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGACCTG 1550877
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134
|||||||||||| |||| ||| | | || ||| || ||| |||| | || ||
Sbjct 1550878 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 1550933
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| |||||||||| |||| ||| || || ||||||||||| || ||| |
Sbjct 1550934 CTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTCGA 1550993
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | ||||| |||| ||| ||||| ||||| ||||| ||||
Sbjct 1550994 GCGCTTCAGCGGCGAGGTCCAGATTCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 1551052
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | |||||| || || |||| ||||| | |
Sbjct 1551053 TGATGGAGAACATACACTCCGAGACGTACTCGCTGCTCATCGACACTTACAT---CAAGG 1551109
Query 125314 CGCAACGTAAACACA---TGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
||| | | | || ||||| ||||| || || || | || | || || || |
Sbjct 1551110 AGCACAGCCAGCGCAGCTACCTCTTCAACGCGATTGAGACCATTCCTTGCATCCGCAAGA 1551169
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
||||| | |||| || || |||||| | ||| | || || || | ||| | | ||||
Sbjct 1551170 AGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGG 1551229
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || |||||||| ||||| |||||||| ||| ||||| ||||||| ||||
Sbjct 1551230 TTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 1551289
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || ||||||||||| ||||| |||||| | || || || ||||
Sbjct 1551290 TCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACG 1551349
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610
|||| || ||| ||||||||| | | ||| | | | | | ||| || |
Sbjct 1551350 AGGGTCTGCACACGGACTTTGCC-TGC--CTGCTGCACTCCCACCTG------AAGAACC 1551400
Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670
| ||||| | || | || | |||| | ||||| ||||| | || || || ||||
Sbjct 1551401 GCGCCAGCAAGGAGGTGATCCGCGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGT 1551460
Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730
| || ||||| |||| || | || | |||||||||| ||| || ||| |||
Sbjct 1551461 TCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGGCATGAACTCCAACCTGATGAAGCAGT 1551520
Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACA 125787
|||| || ||||| || || || || ||| || | ||| || ||| | ||||
Sbjct 1551521 ACATTGAATTTGTTGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAGAAGGTGTACA 1551577
Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847
| | || |||||||| || ||| | ||| || || | || ||||||||||| |
Sbjct 1551578 AGTCGTCCAACCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCT 1551637
Query 125848 TCGAGAAG 125855
| ||||||
Sbjct 1551638 TTGAGAAG 1551645
Score = 141 bits (156), Expect = 1e-28
Identities = 350/522 (67%), Gaps = 18/522 (3%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | ||| ||| | | || ||||| || | | ||| || || | ||
Sbjct 710575 ACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTG-CTCG 710517
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||||||||| || || || || || | ||| ||||| | || || ||
Sbjct 710516 ATACGTCGACCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTG 710457
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| ||||| |||||||| | || | ||||| ||| || || |||| ||
Sbjct 710456 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTTCG 710397
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AAC 97043
|| | ||| |||| ||| || ||| | || ||| | ||||||||||| ||| |
Sbjct 710396 CGCTCGCGACCTGTTCCTTGCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAA 710337
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| |||||| || ||||||||| || | || || || | || ||||
Sbjct 710336 GAACCTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTAC 710279
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG- 97162
||||| ||||||||||| |||| |||||| ||||| ||||| | ||
Sbjct 710278 GGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGCGAGGG-----ACGTG-GCCGC 710225
Query 97163 -AGTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217
|| | || | || |||| |||||| | ||||| || ||||||| ||||| ||
Sbjct 710224 AAGACCATCCGCGCTCAGAAGCTGTGGTACTCCATCCTGGAGGCTCAGACCGAGACCGGT 710165
Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277
| || | ||| |||||||||||| | || ||||| |||||||| || ||||
Sbjct 710164 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGA 710105
Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
|| ||| |||| || || ||||| || || | ||||||
Sbjct 710104 ACTATCCGCAGCTCTAACCTCTGCACTGAGATCATCGAGTAC 710063
>seq2
Length=5759010
Score = 84.2 bits (92), Expect = 3e-11
Identities = 140/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 70333 CGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGAT 70392
||||||||||||||| | ||||| |||||||||||||| | | | ||||||||| |
Sbjct 4488151 CGACATGGGCCTCGGCATCCCCTTCAACATTGCAAGCTACGCGCTTCTCACGCACATGCT 4488210
Query 70393 TGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACAC--CATTGGCGACGCTCAC 70450
|| ||| | || |||| || | || | |||||| ||| || ||||| |||
Sbjct 4488211 CGCCCACGTGTGCGACCTG-GTGC-CGGGAAGCCTCACACACGTCATGGGAGACGCCCAC 4488268
Query 70451 GTGTATTTAAATCACATCGA-GCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTT 70509
|| || | | |||||||| ||| || ||| || ||||| || |||||| | || ||
Sbjct 4488269 GTCTACATCGACCACATCGATGCCCTT-AAGACACAGCTCGAGCGCGAGCCGCGGCCGTT 4488327
Query 70510 TCCCAAGCTGGAGTTT 70525
||| |||||||| ||
Sbjct 4488328 CCCCGAGCTGGAGATT 4488343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059079577880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |