Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 268 1e-66 seq2 84.2 3e-11 >seq7 Length=2761852 Score = 268 bits (296), Expect = 1e-66 Identities = 575/848 (68%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | || ||| Sbjct 1550818 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGACCTG 1550877 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||||||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 1550878 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 1550933 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| |||||||||| |||| ||| || || ||||||||||| || ||| | Sbjct 1550934 CTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTCGA 1550993 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | ||||| |||| ||| ||||| ||||| ||||| |||| Sbjct 1550994 GCGCTTCAGCGGCGAGGTCCAGATTCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 1551052 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | |||||| || || |||| ||||| | | Sbjct 1551053 TGATGGAGAACATACACTCCGAGACGTACTCGCTGCTCATCGACACTTACAT---CAAGG 1551109 Query 125314 CGCAACGTAAACACA---TGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 ||| | | | || ||||| ||||| || || || | || | || || || | Sbjct 1551110 AGCACAGCCAGCGCAGCTACCTCTTCAACGCGATTGAGACCATTCCTTGCATCCGCAAGA 1551169 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||||| | |||| || || |||||| | ||| | || || || | ||| | | |||| Sbjct 1551170 AGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGG 1551229 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 1551230 TTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 1551289 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| ||||| |||||| | || || || |||| Sbjct 1551290 TCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACG 1551349 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| ||||||||| | | ||| | | | | | ||| || | Sbjct 1551350 AGGGTCTGCACACGGACTTTGCC-TGC--CTGCTGCACTCCCACCTG------AAGAACC 1551400 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 | ||||| | || | || | |||| | ||||| ||||| | || || || |||| Sbjct 1551401 GCGCCAGCAAGGAGGTGATCCGCGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGT 1551460 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | || ||||| |||| || | || | |||||||||| ||| || ||| ||| Sbjct 1551461 TCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGGCATGAACTCCAACCTGATGAAGCAGT 1551520 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACA 125787 |||| || ||||| || || || || ||| || | ||| || ||| | |||| Sbjct 1551521 ACATTGAATTTGTTGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAGAAGGTGTACA 1551577 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | | || |||||||| || ||| | ||| || || | || ||||||||||| | Sbjct 1551578 AGTCGTCCAACCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCT 1551637 Query 125848 TCGAGAAG 125855 | |||||| Sbjct 1551638 TTGAGAAG 1551645 Score = 141 bits (156), Expect = 1e-28 Identities = 350/522 (67%), Gaps = 18/522 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| ||| | | || ||||| || | | ||| || || | || Sbjct 710575 ACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTG-CTCG 710517 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||||||||| || || || || || | ||| ||||| | || || || Sbjct 710516 ATACGTCGACCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTG 710457 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||| |||||||| | || | ||||| ||| || || |||| || Sbjct 710456 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTTCG 710397 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AAC 97043 || | ||| |||| ||| || ||| | || ||| | ||||||||||| ||| | Sbjct 710396 CGCTCGCGACCTGTTCCTTGCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAA 710337 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| |||||| || ||||||||| || | || || || | || |||| Sbjct 710336 GAACCTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTAC 710279 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG- 97162 ||||| ||||||||||| |||| |||||| ||||| ||||| | || Sbjct 710278 GGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGCGAGGG-----ACGTG-GCCGC 710225 Query 97163 -AGTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || | || | || |||| |||||| | ||||| || ||||||| ||||| || Sbjct 710224 AAGACCATCCGCGCTCAGAAGCTGTGGTACTCCATCCTGGAGGCTCAGACCGAGACCGGT 710165 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 | || | ||| |||||||||||| | || ||||| |||||||| || |||| Sbjct 710164 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGA 710105 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||| |||| || || ||||| || || | |||||| Sbjct 710104 ACTATCCGCAGCTCTAACCTCTGCACTGAGATCATCGAGTAC 710063 >seq2 Length=5759010 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 70333 CGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGAT 70392 ||||||||||||||| | ||||| |||||||||||||| | | | ||||||||| | Sbjct 4488151 CGACATGGGCCTCGGCATCCCCTTCAACATTGCAAGCTACGCGCTTCTCACGCACATGCT 4488210 Query 70393 TGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACAC--CATTGGCGACGCTCAC 70450 || ||| | || |||| || | || | |||||| ||| || ||||| ||| Sbjct 4488211 CGCCCACGTGTGCGACCTG-GTGC-CGGGAAGCCTCACACACGTCATGGGAGACGCCCAC 4488268 Query 70451 GTGTATTTAAATCACATCGA-GCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTT 70509 || || | | |||||||| ||| || ||| || ||||| || |||||| | || || Sbjct 4488269 GTCTACATCGACCACATCGATGCCCTT-AAGACACAGCTCGAGCGCGAGCCGCGGCCGTT 4488327 Query 70510 TCCCAAGCTGGAGTTT 70525 ||| |||||||| || Sbjct 4488328 CCCCGAGCTGGAGATT 4488343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059079577880