Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 6e-23
>seq2
Length=5759010
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || ||||| ||||| | ||||||||| || || || ||||| |||
Sbjct 4159852 TCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAA 4159911
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| || |||||||| || || || || ||||||||||| | || || ||
Sbjct 4159912 ATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 4159971
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | |||||| | ||| || || || ||||| |||||||| || ||||| || ||
Sbjct 4159972 TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACG 4160031
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 4160032 AAGATCTGCAT 4160042
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || ||||| || || || | || || || || || ||||||
Sbjct 4160588 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 4160647
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || |||||||| || || || || ||||||||||| | ||
Sbjct 4160648 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 4160707
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| || || || ||||| || || || ||
Sbjct 4160708 ACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160767
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 4160768 TTGACGAAGATCTGCAT 4160784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398208220204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |