Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 1e-13
>seq2
Length=5759010
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| || || || ||||||||||| ||||||||||| || || | || || |||| ||
Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTG-CGGCCGTCTTC 4160120
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| || |||| | |||||||| ||| || | || || ||||||
Sbjct 4160121 CAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 4160180
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||||| | | || |||||||||| || || ||| | || || ||
Sbjct 4160181 GATCTTGGACTTGACGTTGTCG--ATGGTATCGGATGATTCGACCTCCAGGGTGATAGTC 4160238
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| || || || || ||||||||
Sbjct 4160239 TTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| || |||||||| || || | || || | ||||| |||||
Sbjct 3574580 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCGAGCTG 3574522
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| | | || | |||||||| ||| || | | ||||||||| || ||
Sbjct 3574521 CTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 3574462
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| |||| ||||||| ||| | || || || || ||
Sbjct 3574461 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCC 3574404
Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
||||| || || || |||||||||||| || ||
Sbjct 3574403 GTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 3574371
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
||| || ||||||||||| || |||||||| || || | || || |||| |||||||
Sbjct 4159839 ATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAGTCCGACCGTCTTCCAGCT 4159897
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
||||||| || |||| | |||||||| || || | || ||||||||| ||| |
Sbjct 4159898 GCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCT 4159957
Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699
| ||||| | | || |||||||| | || ||| || | || || || |||||
Sbjct 4159958 TGGACTTGACGTTGTCG--ATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACC 4160015
Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || || || ||||||||
Sbjct 4160016 CGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251133258013
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |