Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 212 6e-50 seq2 125 7e-24 seq3 96.9 3e-15 >seq7 Length=2761852 Score = 212 bits (234), Expect = 6e-50 Identities = 923/1441 (64%), Gaps = 37/1441 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| ||| || | ||| || ||| |||| Sbjct 709452 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 709511 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | ||||| ||||||||||| |||| || | || ||||||||| || || Sbjct 709512 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACG 709571 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 709572 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 709631 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 || || || ||| | |||||||||||||| ||||||| |||||||| | || || | Sbjct 709632 AGGTCGGAG--GGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTG 709689 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTC---GCAACTCGCCTCC 145351 | ||||| || || ||| |||| | | ||||| | ||| | || ||||| Sbjct 709690 ATCCCTTG-AACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAA---GCCTCA 709745 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 || ||| | ||||| |||||| || ||| |||| ||| || ||| | Sbjct 709746 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGAC 709805 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 || | |||| ||||| | || || || || || ||||| | || || || || Sbjct 709806 TCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATA 709865 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531 || || || ||||||||| | | ||| || || ||| || | || || || Sbjct 709866 GGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATG 709925 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || || | ||| || || || ||||| || | | | | ||| | ||||| | Sbjct 709926 ATGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAG 709985 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 | | |||| | | || || || ||| | || ||||| || || || || Sbjct 709986 CATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCA 710045 Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATG 145708 ||| |||| | | | ||| | | |||||| | ||| | || ||| | ||| Sbjct 710046 ACCTCATCGGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGC---GGATA 710102 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 |||||||| || | ||| || || || | |||||| ||||||||||||||| | || Sbjct 710103 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 710162 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 || ||||| ||| | ||||| ||| | || | ||| || || | | Sbjct 710163 TTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGTC 710222 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 | || || ||||| ||||| || ||| || |||||||| | |||||| Sbjct 710223 TTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAG 710282 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || || | ||||| || || | |||||| ||||| |||| ||| | ||| | | Sbjct 710283 CAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGTTCTTCTCG 710342 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008 || |||| ||| || | ||| || | |||||| || | || |||||| || || | Sbjct 710343 ACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGC---GCGA 710399 Query 146009 ---TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCA 146064 ||||| ||| ||| | || | || ||| | | ||| ||| |||||||| Sbjct 710400 ACCTCCTCCTTACCGTGGTTCTTGC-GGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCA 710458 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121 || || | |||| ||| | ||| || || ||||| |||||||| |||| || Sbjct 710459 GGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGTATCG 710518 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 | ||||||| ||||| |||| |||||| | |||| ||| |||||| || Sbjct 710519 AGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCC 710578 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240 | || || |||| || || | || || || |||| || | ||| || ||| | Sbjct 710579 GGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCAT 710638 Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 |||||| || ||| || ||| | || || |||||||| || |||||||| ||| | Sbjct 710639 -CTTGGAGATCATGGCACACGTCTTC-AGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 710696 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| ||| ||| ||||| ||| ||| ||| || ||| || || || ||| | Sbjct 710697 TTC--ATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGA 710754 Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 || ||| || || || || | || | | ||| | | || || |||| | | Sbjct 710755 GGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGAACAC 710814 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | ||||||||| || ||||| | || || ||||||| |||||| || ||||||| Sbjct 710815 GCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGCCGCT 710874 Query 146478 C 146478 | Sbjct 710875 C 710875 Score = 147 bits (162), Expect = 2e-30 Identities = 351/522 (67%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| | |||||||| || |||||| | || | | | Sbjct 1551151 ATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCC 1551210 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | || ||| |||| |||| |||||||| || ||||| |||| || || Sbjct 1551211 TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCC 1551270 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||||| ||||||| | |||| | ||| |||||||||||||||| ||| |||| Sbjct 1551271 TTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAAC 1551330 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322 ||||| || ||||| |||||||| ||||| ||||||||||| || || || | || | Sbjct 1551331 GAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGC----ACTC 1551386 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA------GCATGTTCAAGGAGGC 46376 | | || | || ||||| | || | | ||| ||| ||| || || Sbjct 1551387 CCACCTGAAGAAC-----CGCGCCAG-CAAGGAGGTGATCCGCGACATCATCACCGACGC 1551440 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 || ||| ||| ||||||| | || | || ||||| || |||||||||||||| Sbjct 1551441 CGTCCGCATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGGCATGAA 1551500 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TC 46495 | | | ||| | ||||| || ||||| || ||||| ||||| || ||| || Sbjct 1551501 CTCCAACCTGATGAAGCAGTACATTGAATTTGTTGCCGACCGCCTGCTGGT--CGCTCTC 1551558 Query 46496 ACCAGC-CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCT 46553 || | |||| | | || | || ||| || ||||| |||||| | ||||||||||| Sbjct 1551559 GGCAACGAGAAG-GTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATCTCCCT 1551617 Query 46554 GGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || ||||| || || || || || |||||||||| ||| || Sbjct 1551618 GGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 1551659 >seq2 Length=5759010 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||| || |||||||| |||||| Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | |||||||||||||| ||| Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||| ||||||||||| |||||| Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || ||| | || | |||||||||||||| || Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||||| | || | ||||||| || |||| Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACC 4160223 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || ||||| |||||||| Sbjct 4160224 TCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | || | ||| |||||||| || |||||||| || Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || |||| ||||||| Sbjct 4160678 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 4160737 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| || || || ||||| |||||||||| Sbjct 4160738 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGA 4160786 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| | || |||||| || |||||||| ||||| Sbjct 4159815 GCCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 4159874 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || |||||||| || ||| | || | ||||||||||| ||||| Sbjct 4159875 CAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGG 4159934 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | ||||| | || || | Sbjct 4159935 GATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCAC 4159994 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || || || || ||||| |||||||| Sbjct 4159995 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | || | || |||||||| || |||||||| || Sbjct 4160272 CCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4160331 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 4160332 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGA 4160391 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||| | Sbjct 4160392 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 4160451 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| |||| || || ||||| || || || |||| Sbjct 4160452 TCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488 >seq3 Length=4316785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| || ||||| |||||||| || ||| ||| Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 838216 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 838275 Query 131225 A 131225 | Sbjct 838276 A 838276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012723297920