Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq7 212 6e-50
seq2 125 7e-24
seq3 96.9 3e-15
>seq7
Length=2761852
Score = 212 bits (234), Expect = 6e-50
Identities = 923/1441 (64%), Gaps = 37/1441 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||| || || | ||||| ||| || | ||| || ||| ||||
Sbjct 709452 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 709511
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || | ||||| ||||||||||| |||| || | || ||||||||| || ||
Sbjct 709512 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACG 709571
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||| | ||||||| |||||| | ||||| || | |||| |||||
Sbjct 709572 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 709631
Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294
|| || || ||| | |||||||||||||| ||||||| |||||||| | || || |
Sbjct 709632 AGGTCGGAG--GGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTG 709689
Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTC---GCAACTCGCCTCC 145351
| ||||| || || ||| |||| | | ||||| | ||| | || |||||
Sbjct 709690 ATCCCTTG-AACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAA---GCCTCA 709745
Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411
|| ||| | ||||| |||||| || ||| |||| ||| || ||| |
Sbjct 709746 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGAC 709805
Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471
|| | |||| ||||| | || || || || || ||||| | || || || ||
Sbjct 709806 TCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATA 709865
Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531
|| || || ||||||||| | | ||| || || ||| || | || || ||
Sbjct 709866 GGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATG 709925
Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591
|| || | ||| || || || ||||| || | | | | ||| | ||||| |
Sbjct 709926 ATGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAG 709985
Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651
| | |||| | | || || || ||| | || ||||| || || || ||
Sbjct 709986 CATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCA 710045
Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATG 145708
||| |||| | | | ||| | | |||||| | ||| | || ||| | |||
Sbjct 710046 ACCTCATCGGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGC---GGATA 710102
Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
|||||||| || | ||| || || || | |||||| ||||||||||||||| | ||
Sbjct 710103 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 710162
Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828
|| ||||| ||| | ||||| ||| | || | ||| || || | |
Sbjct 710163 TTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGTC 710222
Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888
| || || ||||| ||||| || ||| || |||||||| | ||||||
Sbjct 710223 TTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAG 710282
Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948
|| || | ||||| || || | |||||| ||||| |||| ||| | ||| | |
Sbjct 710283 CAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGTTCTTCTCG 710342
Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008
|| |||| ||| || | ||| || | |||||| || | || |||||| || || |
Sbjct 710343 ACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGC---GCGA 710399
Query 146009 ---TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCA 146064
||||| ||| ||| | || | || ||| | | ||| ||| ||||||||
Sbjct 710400 ACCTCCTCCTTACCGTGGTTCTTGC-GGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCA 710458
Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121
|| || | |||| ||| | ||| || || ||||| |||||||| |||| ||
Sbjct 710459 GGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGTATCG 710518
Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181
| ||||||| ||||| |||| |||||| | |||| ||| |||||| ||
Sbjct 710519 AGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCC 710578
Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240
| || || |||| || || | || || || |||| || | ||| || ||| |
Sbjct 710579 GGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCAT 710638
Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297
|||||| || ||| || ||| | || || |||||||| || |||||||| ||| |
Sbjct 710639 -CTTGGAGATCATGGCACACGTCTTC-AGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 710696
Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357
||| ||| ||| ||| ||||| ||| ||| ||| || ||| || || || ||| |
Sbjct 710697 TTC--ATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGA 710754
Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417
|| ||| || || || || | || | | ||| | | || || |||| | |
Sbjct 710755 GGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGAACAC 710814
Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477
| ||||||||| || ||||| | || || ||||||| |||||| || |||||||
Sbjct 710815 GCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGCCGCT 710874
Query 146478 C 146478
|
Sbjct 710875 C 710875
Score = 147 bits (162), Expect = 2e-30
Identities = 351/522 (67%), Gaps = 23/522 (4%)
Strand=Plus/Plus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143
|| || ||| | |||||||| | |||||||| || |||||| | || | | |
Sbjct 1551151 ATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCC 1551210
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
| || ||| |||| |||| |||||||| || ||||| |||| || ||
Sbjct 1551211 TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCC 1551270
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
|||||| ||||||| | |||| | ||| |||||||||||||||| ||| ||||
Sbjct 1551271 TTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAAC 1551330
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322
||||| || ||||| |||||||| ||||| ||||||||||| || || || | || |
Sbjct 1551331 GAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGC----ACTC 1551386
Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA------GCATGTTCAAGGAGGC 46376
| | || | || ||||| | || | | ||| ||| ||| || ||
Sbjct 1551387 CCACCTGAAGAAC-----CGCGCCAG-CAAGGAGGTGATCCGCGACATCATCACCGACGC 1551440
Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436
|| ||| ||| ||||||| | || | || ||||| || ||||||||||||||
Sbjct 1551441 CGTCCGCATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGGCATGAA 1551500
Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TC 46495
| | | ||| | ||||| || ||||| || ||||| ||||| || ||| ||
Sbjct 1551501 CTCCAACCTGATGAAGCAGTACATTGAATTTGTTGCCGACCGCCTGCTGGT--CGCTCTC 1551558
Query 46496 ACCAGC-CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCT 46553
|| | |||| | | || | || ||| || ||||| |||||| | |||||||||||
Sbjct 1551559 GGCAACGAGAAG-GTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATCTCCCT 1551617
Query 46554 GGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| ||||| || || || || || |||||||||| ||| ||
Sbjct 1551618 GGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 1551659
>seq2
Length=5759010
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | || | ||| |||||| || |||||||| ||||||
Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| || |||| | |||||||||||||| |||
Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || || || || || ||||||||||||||
Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || || || | ||| |||||| ||||||||||| ||||||
Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||| || |||||||| || ||| | || | |||||||||||||| ||
Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || |||||||| ||| || ||||| | || | ||||||| || ||||
Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACC 4160223
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || || || || || ||||| ||||||||
Sbjct 4160224 TCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | || || || | || | ||| |||||||| || |||||||| ||
Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| |||||||| || ||| |||| | |||||||||||| |||||
Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||| | | || | || |||| |||||||
Sbjct 4160678 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 4160737
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|||| ||| | ||| || ||||| || || || ||||| ||||||||||
Sbjct 4160738 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGA 4160786
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | ||| || || | ||| | || |||||| || |||||||| |||||
Sbjct 4159815 GCCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 4159874
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || || ||| || |||||||| || ||| | || | ||||||||||| |||||
Sbjct 4159875 CAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGG 4159934
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| || || ||||| | || | ||||| | || || |
Sbjct 4159935 GATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCAC 4159994
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || ||||| || || || || ||||| ||||||||
Sbjct 4159995 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | || || || | || | || |||||||| || |||||||| ||
Sbjct 4160272 CCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4160331
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| || |||| | |||||||||||| |||||
Sbjct 4160332 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGA 4160391
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | |||||| |
Sbjct 4160392 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 4160451
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| |||| || || ||||| || || || ||||
Sbjct 4160452 TCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488
>seq3
Length=4316785
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| || ||| || ||||| |||||||| || ||| |||
Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || |||||||||||||| || || || || ||||| ||| || ||||| | |
Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||| | ||| || || || || || || ||||
Sbjct 838216 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 838275
Query 131225 A 131225
|
Sbjct 838276 A 838276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012723297920
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