Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7 114 9e-21 seq2 89.7 3e-13 >seq7 Length=2761852 Score = 114 bits (126), Expect = 9e-21 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || ||||| |||||||| ||| |||||| ||||| | || || || || ||| Sbjct 1622807 GATGCTTTCTATCGCTACAAGATGGAACGCATCCAGACCAAGATTGAAGGCAAAGGCAAC 1622748 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || || | |||||| |||| ||||| || | || | || |||| | Sbjct 1622747 GGCATCAAGACTGTTGTCGTCAACCTGCCCAGCGTCGCCCAGTCCCTTGCCCGGCCTGGC 1622688 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | || || || || | ||| ||||| |||||||| | |||| | ||| Sbjct 1622687 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTTGGTGCTCAGACCAACATTGACCCCAAG 1622628 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| ||||||| | || | | |||||||||||||| || || Sbjct 1622627 GATGACCGTTGGATCATTAACGGCGCTCACGATGCCGCCAAGCTGCAGGATCACCTCGAT 1622568 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||| |||||||||||| || | | ||| | ||||| |||||||| Sbjct 1622567 GGCTTTATCAACAAGTTTGTGCTCTGCAAGAAGTGCAAGAACCCTGAGACCGA 1622515 >seq2 Length=5759010 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||| ||| |||||||||||||| || || ||||| || | Sbjct 4159816 CCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4159875 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || || || || || || ||||| || || || | ||| Sbjct 4159876 AGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 4159935 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||| || || | || ||||| ||| ||| Sbjct 4159936 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACT 4159995 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || |||||||||| || || ||||| |||||||| Sbjct 4159996 TCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947146931803