Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq7 114 9e-21
seq2 89.7 3e-13
>seq7
Length=2761852
Score = 114 bits (126), Expect = 9e-21
Identities = 201/293 (69%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || ||||| |||||||| ||| |||||| ||||| | || || || || |||
Sbjct 1622807 GATGCTTTCTATCGCTACAAGATGGAACGCATCCAGACCAAGATTGAAGGCAAAGGCAAC 1622748
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || || || | |||||| |||| ||||| || | || | || |||| |
Sbjct 1622747 GGCATCAAGACTGTTGTCGTCAACCTGCCCAGCGTCGCCCAGTCCCTTGCCCGGCCTGGC 1622688
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
|||| | || || || || | ||| ||||| |||||||| | |||| | |||
Sbjct 1622687 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTTGGTGCTCAGACCAACATTGACCCCAAG 1622628
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
| || || | ||| ||||||| | || | | |||||||||||||| || ||
Sbjct 1622627 GATGACCGTTGGATCATTAACGGCGCTCACGATGCCGCCAAGCTGCAGGATCACCTCGAT 1622568
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||||| |||||||||||| || | | ||| | ||||| ||||||||
Sbjct 1622567 GGCTTTATCAACAAGTTTGTGCTCTGCAAGAAGTGCAAGAACCCTGAGACCGA 1622515
>seq2
Length=5759010
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | |||| ||| |||||||||||||| || || ||||| || |
Sbjct 4159816 CCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4159875
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || |||| || | || || || || || || ||||| || || || | |||
Sbjct 4159876 AGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 4159935
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| ||| || ||| || || | || ||||| ||| |||
Sbjct 4159936 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACT 4159995
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| || |||||||||| || || ||||| ||||||||
Sbjct 4159996 TCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947146931803
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |