Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 149 7e-31 >seq7 Length=2761852 Score = 149 bits (164), Expect = 7e-31 Identities = 481/735 (65%), Gaps = 29/735 (4%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CGTAC 92985 || || |||||||| |||||||| ||||| | | ||||| || || ||| || | Sbjct 1551539 TCGGCAACAAATTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCCAGCAGAGCGCA- 1551481 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 ||| || || ||||||| ||| || | |||||| ||||| || | | ||| || Sbjct 1551480 AGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCG 1551421 Query 93044 -ATTACTCTACTATTTGGTG--GTTTTT---GTACGACATAATTGTACATTAAGCACGCA 93097 || || || || ||| | ||| || || || || || | ||| ||| Sbjct 1551420 GATCAC-CTCCTTGCTGGCGCGGTTCTTCAGGTGGGA-------GTGCAGCAGGCAGGCA 1551369 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 ||||| || || | ||| ||||| || || || | ||| ||| || || | || || Sbjct 1551368 AAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGC 1551309 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | || || || ||||||||||| || || || ||||| ||| || || ||||| Sbjct 1551308 ATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCC 1551249 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATC 93274 || ||||| ||||| || || | || | |||||| | ||| || || || |||| Sbjct 1551248 TCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA---GGAGGAGTTCTTGTCCTGGATC 1551192 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 ||| | |||||| || || || || || ||||| | || || || ||||| || Sbjct 1551191 CATCGGATAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAG 1551132 Query 93335 AGGTAATCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 ||||| |||| | | | || | ||||| || ||||| | ||| || ||| | || Sbjct 1551131 AGGTAGCTGCGCTGGCTGTGCTCCTTG-ATGTAAGTGTCGATGAGCAGCGAGTACGTCTC 1551073 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || | |||||||| || ||||| |||||||| || | ||| || | ||||| Sbjct 1551072 GGAGTGTATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTG 1551013 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 || || || | ||| || || || || ||||| || || || || || || || Sbjct 1551012 GACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAA 1550953 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATC 93570 || |||| || || || || | ||||| ||||| || | | || | ||| || Sbjct 1550952 GAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTC 1550893 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 | || || || || || || | || ||| ||||||| || || || || || || || Sbjct 1550892 GTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTT 1550833 Query 93631 GTACATATCCCATAT 93645 |||||| | ||| || Sbjct 1550832 GTACATTTGCCAGAT 1550818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860709510120