Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=5759010 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 3574375 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3574434 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 3574435 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 3574494 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||||||||| ||| | |||||| ||||||| | ||| ||| Sbjct 3574495 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 3574554 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || | || |||| |||| || ||| Sbjct 3574555 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 3574605 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| | ||||| || || || || | || ||| | ||| | |||| Sbjct 4160474 ACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCGACAACGTCAAGTCC 4160415 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || ||||| || ||||| ||||| Sbjct 4160414 AAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTTGCTGGCAAG 4160355 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| |||| || |||||||| || || || ||||| Sbjct 4160354 CAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGGAGTCCAC 4160302 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| ||||||||||| ||||| || || || Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||| ||| |||| || |||||| Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 4160604 ATCCAGAAGGAGTCTACC 4160587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || ||||| ||| | ||||| ||||||||| | | Sbjct 4160042 ATGCAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 4159983 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 4159982 GATACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4159923 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | || || || || | ||| |||||| Sbjct 4159922 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAAC 4159863 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 4159862 ATCCAGAAGGA 4159852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727933499345