Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq7 111 3e-19
seq5 87.8 4e-12
>seq7
Length=2761852
Score = 111 bits (122), Expect = 3e-19
Identities = 296/451 (66%), Gaps = 16/451 (4%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| |||| ||||| |||||| ||||| |||||||| |
Sbjct 1551641 TCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGTTGGAC 1551582
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| | ||| || || || | | |||||| || ||||| || |
Sbjct 1551581 GACTTGTACACCTTCTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAATTCAATG 1551522
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||||| | || | ||||| | ||||| | |
Sbjct 1551521 TACTGCTTCATCAGGTTGGAGTTCATGCCCAGCAGAGCGCAAGGCAGGGCCTCGGTCAGG 1551462
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797
|| |||| ||| || || || || | || | |||||| ||| | |
Sbjct 1551461 AACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCGGATCACCTCCTTGCTGGCG 1551402
Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857
||||| ||| | |||| ||| || | |||| | ||||||||||||||
Sbjct 1551401 CG-----GTTCTTCAGGTGGGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGT 1551347
Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917
| || ||||| ||||||||| | |||||| ||||| | || || ||| ||||||
Sbjct 1551346 CACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTGAGCC 1551287
Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977
||||||| | | ||||| || ||| | | ||||||||| | | ||||| |
Sbjct 1551286 AGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCA 1551227
Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTG 252002
|||||| ||||| || |||||||||
Sbjct 1551226 GGCGCTGGGCAAAGGAGGAGTTCTTGTCCTG 1551196
Score = 93.3 bits (102), Expect = 9e-14
Identities = 123/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | |||||||| ||||| || ||||||| | || |||||||| || || |
Sbjct 594813 CCAACTTCGGTCTGGATGCCGAGCTTGTTTCTCACTCCCAGATGCGCGGTCTGTCCGGTG 594754
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
||||| ||||| |||| | | || |||| |||||| | || ||| |||||||
Sbjct 594753 GCCAGCGTGTCAAGACTGTCCTGGCTGCTTGCTC-GTGGCAGCGACCCCACTTGATCGTC 594695
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838
|| ||||||||||||||||| |||||||| || ||||| || |||
Sbjct 594694 CTTGACGAGCCTACCAACTACCTGGACCGTGACTCTCTGGGTGCCCTG 594647
>seq5
Length=3583426
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || |||||||||||||||||||| ||||| | || ||||| || |
Sbjct 2438358 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGCTCAAG 2438299
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||||||||||| || | || || || || |||||| ||||| ||||| | ||
Sbjct 2438298 GGTGCCGATGTCCTCCTCTTGGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCG 2438239
Query 279816 TGG 279818
|||
Sbjct 2438238 TGG 2438236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836628800933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |