Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 111 3e-19 seq5 87.8 4e-12 >seq7 Length=2761852 Score = 111 bits (122), Expect = 3e-19 Identities = 296/451 (66%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| |||| ||||| |||||| ||||| |||||||| | Sbjct 1551641 TCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGTTGGAC 1551582 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || || || | | |||||| || ||||| || | Sbjct 1551581 GACTTGTACACCTTCTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAATTCAATG 1551522 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||||| | || | ||||| | ||||| | | Sbjct 1551521 TACTGCTTCATCAGGTTGGAGTTCATGCCCAGCAGAGCGCAAGGCAGGGCCTCGGTCAGG 1551462 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797 || |||| ||| || || || || | || | |||||| ||| | | Sbjct 1551461 AACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCGGATCACCTCCTTGCTGGCG 1551402 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||||| ||| | |||| ||| || | |||| | |||||||||||||| Sbjct 1551401 CG-----GTTCTTCAGGTGGGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGT 1551347 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| ||||||||| | |||||| ||||| | || || ||| |||||| Sbjct 1551346 CACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTGAGCC 1551287 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | | ||||| || ||| | | ||||||||| | | ||||| | Sbjct 1551286 AGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCA 1551227 Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTG 252002 |||||| ||||| || ||||||||| Sbjct 1551226 GGCGCTGGGCAAAGGAGGAGTTCTTGTCCTG 1551196 Score = 93.3 bits (102), Expect = 9e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | |||||||| ||||| || ||||||| | || |||||||| || || | Sbjct 594813 CCAACTTCGGTCTGGATGCCGAGCTTGTTTCTCACTCCCAGATGCGCGGTCTGTCCGGTG 594754 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| | | || |||| |||||| | || ||| ||||||| Sbjct 594753 GCCAGCGTGTCAAGACTGTCCTGGCTGCTTGCTC-GTGGCAGCGACCCCACTTGATCGTC 594695 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || ||||||||||||||||| |||||||| || ||||| || ||| Sbjct 594694 CTTGACGAGCCTACCAACTACCTGGACCGTGACTCTCTGGGTGCCCTG 594647 >seq5 Length=3583426 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| || | Sbjct 2438358 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGCTCAAG 2438299 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| || | || || || || |||||| ||||| ||||| | || Sbjct 2438298 GGTGCCGATGTCCTCCTCTTGGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCG 2438239 Query 279816 TGG 279818 ||| Sbjct 2438238 TGG 2438236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836628800933