Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 183 6e-41 seq7 170 4e-37 seq5 86.0 1e-11 >seq2 Length=5759010 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | ||| || || ||||| || |||||||| || || ||| Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| || ||||||||||| | || || || Sbjct 4160678 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 4160737 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || ||||||||||||||||| |||||||| ||| Sbjct 4160738 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATG 4160788 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||| ||| || |||||||| || ||| Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || || Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||| ||| || || ||||| || ||| Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || ||||| | ||||||| |||||||| || | |||||| || Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACC 4160223 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||| || ||||| ||||||||||||||||| |||||||| Sbjct 4160224 TCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | ||| || |||||||| || |||||||| || || ||| Sbjct 4160272 CCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4160331 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || ||| Sbjct 4160332 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGA 4160391 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 4160392 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 4160451 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | || || || || || || ||||||||||||| Sbjct 4160452 TCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488 >seq7 Length=2761852 Score = 170 bits (188), Expect = 4e-37 Identities = 563/866 (65%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 1551680 TTCATGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCG 1551621 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC--AAACTGCTTGGGGT 10050 | ||||| ||| |||||| ||||||||||||| | | || | || ||| || Sbjct 1551620 CCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGT--TGGACGACTTGTACACCTTCTCGT 1551563 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110 ||||| || | | |||||| || || || || |||||||| ||||||||| | Sbjct 1551562 TGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAATTCAATGTACTGCTTCATCAGGTTGG 1551503 Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170 |||||||||| | || ||| || | ||| ||| | ||| |||| ||| || || Sbjct 1551502 AGTTCATGCCCAGCAGAGCGCAAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATGCGGA 1551443 Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGA 10228 | || || || |||| | ||| || | | | || ||||| || | || Sbjct 1551442 CGGCGTCGGTGATGATGTCGCGGATCACCTCCTTGCTGGC-GC-GGTTCTTCAGGTGGGA 1551385 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | ||| || |||| | | ||| || |||||||| || ||||| ||||||||| Sbjct 1551384 GTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGA 1551325 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| ||||||||||| ||||| || |||||||| |||| | || | || Sbjct 1551324 AAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACC 1551265 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408 | ||| | | |||||| ||| | |||| || ||||||| || |||||| || Sbjct 1551264 GCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGT- 1551206 Query 10409 GCGCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464 | | | || ||| ||||| | |||||||| | | | ||| || |||| Sbjct 1551205 TCTTGTCCTGGATCCATCGGATAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCT 1551146 Query 10465 CGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCA 10524 | || || | |||||| | | | |||| | | | |||| || || || | ||||| Sbjct 1551145 CAATCGCGTTGAAGAGGTAGCTGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCA 1551086 Query 10525 GGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTG 10584 | ||||| |||| ||| | | |||| | |||| | ||||||| || | Sbjct 1551085 GCGAGTACGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAG 1551026 Query 10585 CCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCAT 10644 || ||| | ||| || || ||| | | ||||||||| | || ||||| | Sbjct 1551025 CCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGT 1550966 Query 10645 CGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA--- 10701 | | | || |||||| | |||||||| |||||||| ||| |||||||||| Sbjct 1550965 CCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGC 1550906 Query 10702 -GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 ||| || |||||| || |||| | || | | |||||| | |||||||| Sbjct 1550905 GGTTGTT----CCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAG 1550850 Query 10761 GTGGCAACGGCCTTCTTGTACATCTG 10786 | || |||||||||||||||| || Sbjct 1550849 GAAGCCTCGGCCTTCTTGTACATTTG 1550824 Score = 161 bits (178), Expect = 2e-34 Identities = 683/1055 (65%), Gaps = 78/1055 (7%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||||||||||||||| ||||||| |||| |||||||| || |||||| || || Sbjct 595176 CGCCACTGGATGTACTGCGAGGGGGTCTTGTCGAGGTGGTTGTCGATATGGGCAAAGGCG 595235 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || | ||| || Sbjct 595236 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCGCCAGTGGGG 595295 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| ||| || ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 595296 ATGAGC-TCACCGCAGAGAACGTTGATCAGGGTAGACTTGCCAGCACCGTTGGGACCAAT 595354 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219 ||| |||| || || || | ||| || | | |||||||| ||| |||| Sbjct 595355 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATGTTGCTGA---TCTG-GGGCT 595410 Query 225220 ---AGTTT----GGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGT 225266 || | |||| |||| || | ||||||| ||| || | Sbjct 595411 TGGAGGTACCGGGGTACTGGAAGGACATGTTGGTGGCACGCAG------GATAGCCTTGG 595464 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||| ||||| ||| || | | | Sbjct 595465 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGAGG 595524 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGT 225383 | || |||||||| || || || ||||| ||||| | ||||| Sbjct 595525 CACCGAGCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAACTCCTTCAGGT 595581 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | ||||||||| | || |||| || | || ||| | ||| || Sbjct 595582 TACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACG 595637 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501 ||| |||||||||||||||||||| || |||||||| | || | | || | Sbjct 595638 TTGTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTGAT- 595693 Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 ||||| || | |||||| ||||| | ||||||| |||||| || || ||||| | Sbjct 595694 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGA 595752 Query 225561 GAAGCAGGATGTCAG---CATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCC 225617 |||||||||| |||| | |||| || | || || |||| |||||||| |||| Sbjct 595753 GAAGCAGGATATCAGGGGCCTCAAAGACG---GCACGGCACAGAGCGAGCTTCATCTTCC 595809 Query 225618 AGCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT--TCGTCAAAGCCGTACTC 225675 | || |||||||||| | ||| | || | | || ||| |||||| |||| Sbjct 595810 AACCACCGGACAGGGCGGAGATCTCGCCCT--TGATCATCTGCTCGGTGAAGCCGAACTC 595867 Query 225676 ---CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGA 225732 |||| || ||| || | | | | ||||| || | || |||| || | Sbjct 595868 GACCAGGCGCTTCTCGACA-TCCTCCTTGGAGA--------CGTCGACCTTGGCCTCAGC 595918 Query 225733 CGAGA--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGT 225782 | || ||| | ||| |||||| || | | | | | ||||| ||||| Sbjct 595919 C-AGCTTCTTCATGGTCCAGTCAATGGTGGTCATCTCAGTGTCGGCAGAGTCAAGGTCGT 595977 Query 225783 GGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTT 225841 | || ||| | || ||| || | | || | |||||||||||| | ||| | || Sbjct 595978 GCTCAACGAAGACGGTCTTGACTTCGCTCTGCTT-GGGGAAGCCCTCGACCTGCTCGTTG 596036 Query 225842 GCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGA 225901 || ||||| | |||||| |||||| | |||||||||||| ||| |||||| | Sbjct 596037 TTGATGGCACGCATGAGGGTAGACTTGCCGGAACCGTTGGGACCGCAGAGACCGTAACGC 596096 Query 225902 TTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGG 225961 | |||||||||| | |||| | || ||| || ||||||||| |||| |||||||| Sbjct 596097 TGACCGCGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGA 596156 Query 225962 GAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||| ||| | ||| |||||||| |||||||| Sbjct 596157 GAGAAGGTGCAGTTGCAGAGGTCCTCGCCCTCCTC 596191 >seq5 Length=3583426 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||||| ||| | |||||||| |||| | || | | Sbjct 2437694 TATCGCCACTGCAGATACTGGTTGGGAGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 2437753 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 |||||||| | ||| | || || | |||||| |||||| || ||| || Sbjct 2437754 GCATGCTGCTTGATGTAGCCAATTCGGAGGTTGGGGTGCTTCTCAACCTTGCCGGTGGTG 2437813 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | |||||| | |||| |||||||||||| ||||| || Sbjct 2437814 GGGATGGTCTCGCCGGTGAGCAGCTTGATCAAGGTAGACTTGCCCGCACCGTTGGGTCCG 2437873 Query 225158 AT 225159 || Sbjct 2437874 AT 2437875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622250236360