Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2 183 6e-41
seq7 170 4e-37
seq5 86.0 1e-11
>seq2
Length=5759010
Score = 183 bits (202), Expect = 6e-41
Identities = 179/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | || | ||| || || ||||| || |||||||| || || |||
Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || ||||| || |||
Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| || ||||||||||| | || || ||
Sbjct 4160678 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 4160737
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || ||||||||||||||||| |||||||| |||
Sbjct 4160738 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATG 4160788
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || ||| ||| || |||||||| || |||
Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | || ||||| || ||
Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||| ||| || || ||||| || |||
Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || ||||| || || | || ||||| || |||
Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| || ||||| | ||||||| |||||||| || | |||||| ||
Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACC 4160223
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| |||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 4160224 TCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | || | ||| || |||||||| || |||||||| || || |||
Sbjct 4160272 CCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4160331
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || ||||| | || ||||| || |||
Sbjct 4160332 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGA 4160391
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 4160392 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 4160451
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | || || || || || || |||||||||||||
Sbjct 4160452 TCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488
>seq7
Length=2761852
Score = 170 bits (188), Expect = 4e-37
Identities = 563/866 (65%), Gaps = 21/866 (2%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||||||||| || | || || ||| |||||||||| ||||||
Sbjct 1551680 TTCATGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCG 1551621
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC--AAACTGCTTGGGGT 10050
| ||||| ||| |||||| ||||||||||||| | | || | || ||| ||
Sbjct 1551620 CCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGT--TGGACGACTTGTACACCTTCTCGT 1551563
Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110
||||| || | | |||||| || || || || |||||||| ||||||||| |
Sbjct 1551562 TGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAATTCAATGTACTGCTTCATCAGGTTGG 1551503
Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170
|||||||||| | || ||| || | ||| ||| | ||| |||| ||| || ||
Sbjct 1551502 AGTTCATGCCCAGCAGAGCGCAAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATGCGGA 1551443
Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGA 10228
| || || || |||| | ||| || | | | || ||||| || | ||
Sbjct 1551442 CGGCGTCGGTGATGATGTCGCGGATCACCTCCTTGCTGGC-GC-GGTTCTTCAGGTGGGA 1551385
Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288
| ||| || |||| | | ||| || |||||||| || ||||| |||||||||
Sbjct 1551384 GTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGA 1551325
Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348
|| ||| ||||||||||| ||||| || |||||||| |||| | || | ||
Sbjct 1551324 AAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACC 1551265
Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408
| ||| | | |||||| ||| | |||| || ||||||| || |||||| ||
Sbjct 1551264 GCTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGT- 1551206
Query 10409 GCGCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464
| | | || ||| ||||| | |||||||| | | | ||| || ||||
Sbjct 1551205 TCTTGTCCTGGATCCATCGGATAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCT 1551146
Query 10465 CGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCA 10524
| || || | |||||| | | | |||| | | | |||| || || || | |||||
Sbjct 1551145 CAATCGCGTTGAAGAGGTAGCTGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCA 1551086
Query 10525 GGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTG 10584
| ||||| |||| ||| | | |||| | |||| | ||||||| || |
Sbjct 1551085 GCGAGTACGTCTCGGAGTGTATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAG 1551026
Query 10585 CCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCAT 10644
|| ||| | ||| || || ||| | | ||||||||| | || ||||| |
Sbjct 1551025 CCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGT 1550966
Query 10645 CGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA--- 10701
| | | || |||||| | |||||||| |||||||| ||| ||||||||||
Sbjct 1550965 CCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGC 1550906
Query 10702 -GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760
||| || |||||| || |||| | || | | |||||| | ||||||||
Sbjct 1550905 GGTTGTT----CCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAG 1550850
Query 10761 GTGGCAACGGCCTTCTTGTACATCTG 10786
| || |||||||||||||||| ||
Sbjct 1550849 GAAGCCTCGGCCTTCTTGTACATTTG 1550824
Score = 161 bits (178), Expect = 2e-34
Identities = 683/1055 (65%), Gaps = 78/1055 (7%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
||||||||||||||||| ||||||| |||| |||||||| || |||||| || ||
Sbjct 595176 CGCCACTGGATGTACTGCGAGGGGGTCTTGTCGAGGTGGTTGTCGATATGGGCAAAGGCG 595235
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | || | ||| ||
Sbjct 595236 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCGCCAGTGGGG 595295
Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || ||| ||| || ||||| || |||| |||||| ||||| ||||| |||||
Sbjct 595296 ATGAGC-TCACCGCAGAGAACGTTGATCAGGGTAGACTTGCCAGCACCGTTGGGACCAAT 595354
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219
||| |||| || || || | ||| || | | |||||||| ||| ||||
Sbjct 595355 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATGTTGCTGA---TCTG-GGGCT 595410
Query 225220 ---AGTTT----GGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGT 225266
|| | |||| |||| || | ||||||| ||| || |
Sbjct 595411 TGGAGGTACCGGGGTACTGGAAGGACATGTTGGTGGCACGCAG------GATAGCCTTGG 595464
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326
|||||| | | |||||| ||||| |||||||| ||||| ||| || | | |
Sbjct 595465 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGAGG 595524
Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGT 225383
| || |||||||| || || || ||||| ||||| | |||||
Sbjct 595525 CACCGAGCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAACTCCTTCAGGT 595581
Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442
| || ||| | ||||||||| | || |||| || | || ||| | ||| ||
Sbjct 595582 TACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACG 595637
Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501
||| |||||||||||||||||||| || |||||||| | || | | || |
Sbjct 595638 TTGTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTGAT- 595693
Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560
||||| || | |||||| ||||| | ||||||| |||||| || || ||||| |
Sbjct 595694 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGA 595752
Query 225561 GAAGCAGGATGTCAG---CATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCC 225617
|||||||||| |||| | |||| || | || || |||| |||||||| ||||
Sbjct 595753 GAAGCAGGATATCAGGGGCCTCAAAGACG---GCACGGCACAGAGCGAGCTTCATCTTCC 595809
Query 225618 AGCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT--TCGTCAAAGCCGTACTC 225675
| || |||||||||| | ||| | || | | || ||| |||||| ||||
Sbjct 595810 AACCACCGGACAGGGCGGAGATCTCGCCCT--TGATCATCTGCTCGGTGAAGCCGAACTC 595867
Query 225676 ---CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGA 225732
|||| || ||| || | | | | ||||| || | || |||| || |
Sbjct 595868 GACCAGGCGCTTCTCGACA-TCCTCCTTGGAGA--------CGTCGACCTTGGCCTCAGC 595918
Query 225733 CGAGA--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGT 225782
| || ||| | ||| |||||| || | | | | | ||||| |||||
Sbjct 595919 C-AGCTTCTTCATGGTCCAGTCAATGGTGGTCATCTCAGTGTCGGCAGAGTCAAGGTCGT 595977
Query 225783 GGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTT 225841
| || ||| | || ||| || | | || | |||||||||||| | ||| | ||
Sbjct 595978 GCTCAACGAAGACGGTCTTGACTTCGCTCTGCTT-GGGGAAGCCCTCGACCTGCTCGTTG 596036
Query 225842 GCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGA 225901
|| ||||| | |||||| |||||| | |||||||||||| ||| |||||| |
Sbjct 596037 TTGATGGCACGCATGAGGGTAGACTTGCCGGAACCGTTGGGACCGCAGAGACCGTAACGC 596096
Query 225902 TTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGG 225961
| |||||||||| | |||| | || ||| || ||||||||| |||| ||||||||
Sbjct 596097 TGACCGCGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGA 596156
Query 225962 GAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
||||| ||| | ||| |||||||| ||||||||
Sbjct 596157 GAGAAGGTGCAGTTGCAGAGGTCCTCGCCCTCCTC 596191
>seq5
Length=3583426
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | ||||||||||| ||| | |||||||| |||| | || | |
Sbjct 2437694 TATCGCCACTGCAGATACTGGTTGGGAGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 2437753
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|||||||| | ||| | || || | |||||| |||||| || ||| ||
Sbjct 2437754 GCATGCTGCTTGATGTAGCCAATTCGGAGGTTGGGGTGCTTCTCAACCTTGCCGGTGGTG 2437813
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | |||||||||||| | |||||| | |||| |||||||||||| ||||| ||
Sbjct 2437814 GGGATGGTCTCGCCGGTGAGCAGCTTGATCAAGGTAGACTTGCCCGCACCGTTGGGTCCG 2437873
Query 225158 AT 225159
||
Sbjct 2437874 AT 2437875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622250236360
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