Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
>seq2
Length=5759010
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || || || |||||||| || | ||||| ||| || || || || |||
Sbjct 4160588 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 4160647
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| ||||| ||||||||||| || ||||| |||||| ||
Sbjct 4160648 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 4160707
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||||| || ||||| || | ||| | || |||||||| || ||
Sbjct 4160708 ACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160767
Query 114366 TTTACAAAAATCTGCATG 114383
|| || || |||||||||
Sbjct 4160768 TTGACGAAGATCTGCATG 4160785
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|| || ||||||||||| ||||||| ||| || ||||| || || ||||||||| |
Sbjct 4160080 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 4160139
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| || ||||| |||||||| ||||| || |||||||| ||||| || | |
Sbjct 4160140 ATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTG 4160199
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|| | ||| |||| |||||||| |||| ||| | || || || || || || || ||
Sbjct 4160200 TCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACG 4160259
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 4160260 AAGATCTGCAT 4160270
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|| || || |||||||| ||||||| || || ||| || || || || || || ||
Sbjct 3574568 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 3574509
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| || ||||| |||||||| || ||||| || ||||| ||||| || | |
Sbjct 3574508 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 3574449
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|| | |||||||| || || || || | ||| | ||| || || || || || || ||
Sbjct 3574448 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACG 3574389
Query 114372 AAAATCTGCAT 114382
|||||||||||
Sbjct 3574388 AAAATCTGCAT 3574378
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287
|| ||||| || || ||||| ||||||||||||| ||||| ||||||||||| || |||
Sbjct 4160344 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160403
Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347
|| ||||| || | | || | |||||| | ||| || || || | || | |
Sbjct 4160404 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATC 4160463
Query 114348 GTTTTGCCGGTCAGAGTTTTTAC 114370
|| ||||||||||| || || ||
Sbjct 4160464 GTCTTGCCGGTCAGGGTCTTGAC 4160486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420134333434956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |