Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=5759010 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | ||||| ||| || || || || ||| Sbjct 4160588 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 4160647 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 4160648 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 4160707 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || ||||| || | ||| | || |||||||| || || Sbjct 4160708 ACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160767 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 4160768 TTGACGAAGATCTGCATG 4160785 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||||||| ||| || ||||| || || ||||||||| | Sbjct 4160080 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 4160139 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| |||||||| ||||| || |||||||| ||||| || | | Sbjct 4160140 ATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTG 4160199 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||| |||| |||||||| |||| ||| | || || || || || || || || Sbjct 4160200 TCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACG 4160259 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 4160260 AAGATCTGCAT 4160270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || || ||| || || || || || || || Sbjct 3574568 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 3574509 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| |||||||| || ||||| || ||||| ||||| || | | Sbjct 3574508 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 3574449 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| || || || || | ||| | ||| || || || || || || || Sbjct 3574448 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACG 3574389 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 3574388 AAAATCTGCAT 3574378 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||| || || ||||| ||||||||||||| ||||| ||||||||||| || ||| Sbjct 4160344 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160403 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||| | ||| || || || | || | | Sbjct 4160404 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATC 4160463 Query 114348 GTTTTGCCGGTCAGAGTTTTTAC 114370 || ||||||||||| || || || Sbjct 4160464 GTCTTGCCGGTCAGGGTCTTGAC 4160486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134333434956