Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 3e-15
>seq2
Length=5759010
Score = 96.9 bits (106), Expect = 3e-15
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| ||||| ||||| || || |||||||||||||| |||||||| || ||
Sbjct 3574605 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 3574547
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
| || || | || || | |||||||||||||| |||||||||||||| ||| |
Sbjct 3574546 TCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGG 3574487
Query 34019 GCACGCTCTCTTTGTCC 34035
| | || ||| ||||||
Sbjct 3574486 GGATGCCCTCCTTGTCC 3574470
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || || |||||||| || |||||||||||||| |||||||| || || | || ||
Sbjct 4159825 AGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAGTCCG 4159883
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
|||| |||| ||||| || || || |||||||||||||| || || | | |||
Sbjct 4159884 ACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 4159943
Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088
|||||| ||| || ||| | | | |||||| ||||| ||| | ||
Sbjct 4159944 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGT 4160003
Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || || || ||||| || || ||||| |||||
Sbjct 4160004 AATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968
|| || || |||| || || ||||||||||||||||||||||| || || | || ||
Sbjct 4160053 AGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTG-CG 4160111
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
|||| |||| ||||| || || || |||||||||||||| ||| || | | |||
Sbjct 4160112 GCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTC 4160171
Query 34029 TTTGTCC 34035
|||||||
Sbjct 4160172 TTTGTCC 4160178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397062337090426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |