Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=5759010 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| ||||| || || |||||||||||||| |||||||| || || Sbjct 3574605 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 3574547 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || || | |||||||||||||| |||||||||||||| ||| | Sbjct 3574546 TCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGG 3574487 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 3574486 GGATGCCCTCCTTGTCC 3574470 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||||||| || |||||||||||||| |||||||| || || | || || Sbjct 4159825 AGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAGTCCG 4159883 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| ||||| || || || |||||||||||||| || || | | ||| Sbjct 4159884 ACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 4159943 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||| | | | |||||| ||||| ||| | || Sbjct 4159944 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGT 4160003 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || ||||| || || ||||| ||||| Sbjct 4160004 AATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || |||| || || ||||||||||||||||||||||| || || | || || Sbjct 4160053 AGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTG-CG 4160111 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| ||||| || || || |||||||||||||| ||| || | | ||| Sbjct 4160112 GCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTC 4160171 Query 34029 TTTGTCC 34035 ||||||| Sbjct 4160172 TTTGTCC 4160178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062337090426