Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 6e-23
>seq2
Length=5759010
Score = 123 bits (136), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | || | ||||| || || || || || ||||||
Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| | || || || ||||| ||||| ||||| || || |||
Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGG---TCCGGG 4160160
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| |||||||| || | || ||||| || || | |||| |||||
Sbjct 4160161 GGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCG 4160220
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 4160221 ACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 123 bits (136), Expect = 6e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || || || |||| || || || ||||| || ||||| | |
Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || ||||| |||||||| |||||||| || | ||
Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | ||||| || || || | ||| ||| || ||
Sbjct 4160678 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 4160737
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| ||||| ||||| || ||||||||||| |||||||| |||
Sbjct 4160738 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATG 4160788
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||||| || || ||||| || ||||||
Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || |||||||| ||||| || |||
Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || ||
Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654203513814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |