Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7 206 3e-48
seq2 113 4e-20
>seq7
Length=2761852
Score = 206 bits (228), Expect = 3e-48
Identities = 928/1446 (64%), Gaps = 41/1446 (3%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || ||||| || || | || |||| | || | ||| |||| | |
Sbjct 709450 GGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 709509
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| ||||||| ||||| || || |||| ||| | || || |||||| || |
Sbjct 709510 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGA 709569
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
| | ||| || || | |||||| | || | ||||| | | | ||| ||||
Sbjct 709570 CGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCC 709629
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267
|||| | || || | ||| ||||||||| ||||| | | || | |||||
Sbjct 709630 ACAGGTCGGAGGGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTG 709689
Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327
|| |||| ||| ||| || | ||| | || | |||||| || |
Sbjct 709690 ATCCCTTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAAGCCTCAAGGG 709749
Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGT 153387
|| ||| ||| ||||| ||| ||| || || || || || || || |||
Sbjct 709750 CGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAA 709809
Query 153388 ACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446
| |||| ||||| ||| | || ||||| || |||||||| | |||||| || || |||
Sbjct 709810 AGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGT 709868
Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAA 153504
|| || | ||||||| | || ||| || | || || || || ||| || |
Sbjct 709869 CGGTGGCGCATGTTGCTGTTGCGGGC-CTC-CTGGACAGGGTAATGGTTCACATCAATGA 709926
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
| ||||||||| || || ||||| || || | | | ||| |||| ||| || |||
Sbjct 709927 TGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAG- 709985
Query 153565 TCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
||| ||||| | | ||| | | ||| | ||| |||| || ||||| ||
Sbjct 709986 -CATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGC 710044
Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTTAT 153679
||| |||| | | | ||||| | |||||| | ||||||||| ||||| | |
Sbjct 710045 AACCTCATCGGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGT 710104
Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|||| || | ||| ||||| ||||| ||||| || ||| |||||||| | ||
Sbjct 710105 T---CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGG 710161
Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799
||||||||| || | || | ||| | ||| | ||| || || |
Sbjct 710162 GTTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGT 710221
Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859
|| || || |||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 710222 CTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTA 710281
Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916
|||||| || ||||| || || | | || ||||| |||| ||| || | || |
Sbjct 710282 GCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGT--TCTTC 710339
Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976
| ||| || |||||| ||||| || | ||| || || | |||||||| ||
Sbjct 710340 -TCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGC--- 710395
Query 153977 GCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGT 154032
|| | ||||| | || || | | || | |||| || | | | ||| ||||||||
Sbjct 710396 GCGAACCTCCTCCTTACCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGT 710454
Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGT 154089
||||||| || | ||||| ||| | |||||| |||||| |||||||| |||||||
Sbjct 710455 GCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGT 710514
Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGG 154149
|| | | ||||||||||| |||| |||||| | |||| | | |||||||||||
Sbjct 710515 ATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 710574
Query 154150 TCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-G 154208
| || | | |||| ||| || | | || ||||| | ||||| || || |
Sbjct 710575 TGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAG 710634
Query 154209 CCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTAT 154266
|| | ||| || || || ||| || | ||| || |||||| || || ||||| |
Sbjct 710635 CCAT-CTTGGAGAT--CATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGT 710691
Query 154267 CGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC-GCGTTCCCGCCGAA 154325
|||| | | ||| || ||| || || ||| || || ||| | || || ||
Sbjct 710692 CGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCATTG 710750
Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385
||||||||||| || || || || | || | ||| | | |||| || ||||
Sbjct 710751 AAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGA 710810
Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445
| || || || || || ||||| | || || ||||||| ||||||||| ||
Sbjct 710811 ACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGC 710870
Query 154446 CGTTCG 154451
|| |||
Sbjct 710871 CGCTCG 710876
Score = 179 bits (198), Expect = 4e-40
Identities = 505/766 (66%), Gaps = 31/766 (4%)
Strand=Plus/Plus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | |||| |||||||||||| | || ||
Sbjct 1550911 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGC 1550970
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAA-CTCGAGGCGCA 52204
||||| ||| ||||| ||||| | | |||||| | ||| || | |||||| |
Sbjct 1550971 ATCGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATTCCCGAGGCTCG 1551029
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
| ||| || || || | | || ||| | | ||| | |||| |||| |||||
Sbjct 1551030 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATACACTCCGAGACGTACTCGCTGCT 1551089
Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321
||| || || || | | | | |||||| ||||| | || | || ||| | ||
Sbjct 1551090 CATCGA-CA-CTTACATCA-AGGAGCACAGCCAGCGCAGCTACCTCTTCAACGCGATTGA 1551146
Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381
| | | || ||| | ||||| |||||| | ||||| || |||||| || | | |
Sbjct 1551147 GACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAA 1551206
Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
| || | | ||| ||||| |||| ||||| ||| |||||||| | || || |||
Sbjct 1551207 CTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGG 1551266
Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501
||||||| ||||||| | | || | | || | |||||||||||||| ||
Sbjct 1551267 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTC 1551326
Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACTA 52558
||||||| | || ||||| ||||| || ||||||||||||||||| ||||| || |||
Sbjct 1551327 CAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC 1551386
Query 52559 C------AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612
| |||| |||| | | | ||| ||||| ||| |||
Sbjct 1551387 CCACCTGAAGAACCGCGCCAGCAA------------GGAGGTGATCCGCGACATCATCAC 1551434
Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672
|| || || ||||| ||||||| | || | || ||||| || ||||||||
Sbjct 1551435 CGACGCCGTCCGCATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGG 1551494
Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
||||||| | | ||| ||||||| || ||||| || || || ||| ||||
Sbjct 1551495 CATGAACTCCAACCTGATGAAGCAGTACATTGAATTTGTTGCCGACCGCCTGCTGGTCGC 1551554
Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791
||| |||| | | ||| | ||| | ||| || ||||| |||||| | ||||| |
Sbjct 1551555 TCTC-GGCAACGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATCT 1551613
Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || | |||||||||||||| || |||||||| |||| ||| ||
Sbjct 1551614 CCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 1551659
>seq2
Length=5759010
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || || |||| | |
Sbjct 3574569 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 3574510
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 3574509 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3574450
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||| | || | ||| || || || || || || ||
Sbjct 3574449 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 3574390
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 3574389 GAAAATCTGCAT 3574378
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/197 (72%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||||| |||||||| || || || |
Sbjct 4160591 GACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4160650
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538
|||| |||||||| ||||| ||||| || || || ||||| ||| | || | ||
Sbjct 4160651 AAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTCAC 4160709
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | |||||||| |||||| ||||||| || | || || || || || || |
Sbjct 4160710 ATTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCT 4160768
Query 138599 TTACAAAAATCTGCATG 138615
| || || |||||||||
Sbjct 4160769 TGACGAAGATCTGCATG 4160785
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| ||| || ||| || || || ||||| | |
Sbjct 4159851 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAA 4159910
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
|| || ||||| ||||| ||||| ||||| || ||||| ||| | || | || | |
Sbjct 4159911 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTTGACGT 4159969
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | ||| || | || ||||| || | || | ||| ||||| ||||| || ||
Sbjct 4159970 TG-TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTA 4160028
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 4160029 ACGAAGATCTGCAT 4160042
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| ||||||||||||||||||| ||| || ||| || || || ||||| | |
Sbjct 4160079 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAA 4160138
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
|| || ||||| |||||||| || ||||| |||||||| ||| || || | |
Sbjct 4160139 AATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTT 4160198
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||| |||| || || ||||| | || | || || || || || || || ||
Sbjct 4160199 GTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGAC 4160258
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 4160259 GAAGATCTGCAT 4160270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262319357360
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