Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 206 3e-48 seq2 113 4e-20 >seq7 Length=2761852 Score = 206 bits (228), Expect = 3e-48 Identities = 928/1446 (64%), Gaps = 41/1446 (3%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || || | || |||| | || | ||| |||| | | Sbjct 709450 GGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 709509 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| ||||| || || |||| ||| | || || |||||| || | Sbjct 709510 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGA 709569 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | ||| || || | |||||| | || | ||||| | | | ||| |||| Sbjct 709570 CGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCC 709629 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| | || || | ||| ||||||||| ||||| | | || | ||||| Sbjct 709630 ACAGGTCGGAGGGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTG 709689 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327 || |||| ||| ||| || | ||| | || | |||||| || | Sbjct 709690 ATCCCTTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAAGCCTCAAGGG 709749 Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGT 153387 || ||| ||| ||||| ||| ||| || || || || || || || ||| Sbjct 709750 CGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAA 709809 Query 153388 ACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 | |||| ||||| ||| | || ||||| || |||||||| | |||||| || || ||| Sbjct 709810 AGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGT 709868 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAA 153504 || || | ||||||| | || ||| || | || || || || ||| || | Sbjct 709869 CGGTGGCGCATGTTGCTGTTGCGGGC-CTC-CTGGACAGGGTAATGGTTCACATCAATGA 709926 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | ||||||||| || || ||||| || || | | | ||| |||| ||| || ||| Sbjct 709927 TGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAG- 709985 Query 153565 TCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 ||| ||||| | | ||| | | ||| | ||| |||| || ||||| || Sbjct 709986 -CATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGC 710044 Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTTAT 153679 ||| |||| | | | ||||| | |||||| | ||||||||| ||||| | | Sbjct 710045 AACCTCATCGGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGT 710104 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || | ||| ||||| ||||| ||||| || ||| |||||||| | || Sbjct 710105 T---CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGG 710161 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799 ||||||||| || | || | ||| | ||| | ||| || || | Sbjct 710162 GTTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGT 710221 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859 || || || |||||||||||||| |||||||| ||||||||| |||||||| Sbjct 710222 CTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTA 710281 Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916 |||||| || ||||| || || | | || ||||| |||| ||| || | || | Sbjct 710282 GCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGT--TCTTC 710339 Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976 | ||| || |||||| ||||| || | ||| || || | |||||||| || Sbjct 710340 -TCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGC--- 710395 Query 153977 GCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGT 154032 || | ||||| | || || | | || | |||| || | | | ||| |||||||| Sbjct 710396 GCGAACCTCCTCCTTACCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGT 710454 Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGT 154089 ||||||| || | ||||| ||| | |||||| |||||| |||||||| ||||||| Sbjct 710455 GCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGT 710514 Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGG 154149 || | | ||||||||||| |||| |||||| | |||| | | ||||||||||| Sbjct 710515 ATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 710574 Query 154150 TCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-G 154208 | || | | |||| ||| || | | || ||||| | ||||| || || | Sbjct 710575 TGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAG 710634 Query 154209 CCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTAT 154266 || | ||| || || || ||| || | ||| || |||||| || || ||||| | Sbjct 710635 CCAT-CTTGGAGAT--CATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGT 710691 Query 154267 CGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC-GCGTTCCCGCCGAA 154325 |||| | | ||| || ||| || || ||| || || ||| | || || || Sbjct 710692 CGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCATTG 710750 Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385 ||||||||||| || || || || | || | ||| | | |||| || |||| Sbjct 710751 AAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGA 710810 Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445 | || || || || || ||||| | || || ||||||| ||||||||| || Sbjct 710811 ACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGC 710870 Query 154446 CGTTCG 154451 || ||| Sbjct 710871 CGCTCG 710876 Score = 179 bits (198), Expect = 4e-40 Identities = 505/766 (66%), Gaps = 31/766 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| |||||||||||| | || || Sbjct 1550911 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGC 1550970 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAA-CTCGAGGCGCA 52204 ||||| ||| ||||| ||||| | | |||||| | ||| || | |||||| | Sbjct 1550971 ATCGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATTCCCGAGGCTCG 1551029 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| |||| ||||| Sbjct 1551030 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATACACTCCGAGACGTACTCGCTGCT 1551089 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || | | | | |||||| ||||| | || | || ||| | || Sbjct 1551090 CATCGA-CA-CTTACATCA-AGGAGCACAGCCAGCGCAGCTACCTCTTCAACGCGATTGA 1551146 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| | ||||| |||||| | ||||| || |||||| || | | | Sbjct 1551147 GACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAA 1551206 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | || | | ||| ||||| |||| ||||| ||| |||||||| | || || ||| Sbjct 1551207 CTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGG 1551266 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | | || | |||||||||||||| || Sbjct 1551267 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTC 1551326 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACTA 52558 ||||||| | || ||||| ||||| || ||||||||||||||||| ||||| || ||| Sbjct 1551327 CAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC 1551386 Query 52559 C------AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612 | |||| |||| | | | ||| ||||| ||| ||| Sbjct 1551387 CCACCTGAAGAACCGCGCCAGCAA------------GGAGGTGATCCGCGACATCATCAC 1551434 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || ||||| ||||||| | || | || ||||| || |||||||| Sbjct 1551435 CGACGCCGTCCGCATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCTCTGCTGGG 1551494 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | ||| ||||||| || ||||| || || || ||| |||| Sbjct 1551495 CATGAACTCCAACCTGATGAAGCAGTACATTGAATTTGTTGCCGACCGCCTGCTGGTCGC 1551554 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||| |||| | | ||| | ||| | ||| || ||||| |||||| | ||||| | Sbjct 1551555 TCTC-GGCAACGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATCT 1551613 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || | |||||||||||||| || |||||||| |||| ||| || Sbjct 1551614 CCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 1551659 >seq2 Length=5759010 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || || |||| | | Sbjct 3574569 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 3574510 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 3574509 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3574450 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || || || || Sbjct 3574449 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 3574390 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 3574389 GAAAATCTGCAT 3574378 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| |||||||| || || || | Sbjct 4160591 GACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4160650 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||| ||||| ||||| || || || ||||| ||| | || | || Sbjct 4160651 AAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTCAC 4160709 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| |||||| ||||||| || | || || || || || || | Sbjct 4160710 ATTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCT 4160768 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 4160769 TGACGAAGATCTGCATG 4160785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||| || ||| || || || ||||| | | Sbjct 4159851 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAA 4159910 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || ||||| ||||| ||||| ||||| || ||||| ||| | || | || | | Sbjct 4159911 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTTGACGT 4159969 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | || ||||| || | || | ||| ||||| ||||| || || Sbjct 4159970 TG-TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTA 4160028 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4160029 ACGAAGATCTGCAT 4160042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||||| ||| || ||| || || || ||||| | | Sbjct 4160079 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAA 4160138 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || || ||||| |||||||| || ||||| |||||||| ||| || || | | Sbjct 4160139 AATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTT 4160198 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| |||| || || ||||| | || | || || || || || || || || Sbjct 4160199 GTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGAC 4160258 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 4160259 GAAGATCTGCAT 4160270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262319357360