Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 4e-20
seq3 98.7 9e-16
>seq2
Length=5759010
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | || ||| || || || ||||| |||
Sbjct 3574607 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 3574548
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || ||||| ||| || ||||| || || || |||||| |||||||| || ||
Sbjct 3574547 CTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGG 3574488
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062
|| ||||||||||||||| ||| || ||||| ||||| ||| |||||| | | |||
Sbjct 3574487 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTC 3574429
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || |||||||||||
Sbjct 3574428 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| || | || || ||| || ||||| ||||||
Sbjct 4160588 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 4160647
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || ||||| ||||||||||||||| || || |||
Sbjct 4160648 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 4160707
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| |||| ||| | || |||||||| || ||
Sbjct 4160708 ACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160767
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 4160768 TTGACGAAGATCTGCATG 4160785
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| |||| || || ||| || || ||||| || |||||| |
Sbjct 4159851 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAA 4159910
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
|||| |||||||| || ||||| || |||||||||||| || || ||||| |||
Sbjct 4159911 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTT 4159970
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| ||| || | || ||||| | || | ||| || || ||||| || || |
Sbjct 4159971 G-TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAA 4160029
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 4160030 CGAAGATCTGCAT 4160042
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || ||||| |||| | |||||||| || ||||| ||||||||||||
Sbjct 4160344 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160403
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| || ||||| |||| |||| |||||| | ||| || |||| || |
Sbjct 4160404 TCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCAGAGGACTCAACCTCGAGAGTAAT 4160462
Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101
||| ||||||||||| || || ||
Sbjct 4160463 CGTCTTGCCGGTCAGGGTCTTGAC 4160486
>seq3
Length=4316785
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || || || ||| || ||||| || |||||| |||||
Sbjct 838098 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 838157
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
||||||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 838158 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 838217
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||| | |||||| || | ||| | || ||||| ||||| || || || ||
Sbjct 838218 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 838276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500722731120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |