Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq7 199 5e-46
seq4 91.5 2e-13
>seq7
Length=2761852
Score = 199 bits (220), Expect = 5e-46
Identities = 1079/1698 (64%), Gaps = 59/1698 (3%)
Strand=Plus/Plus
Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTT-GGCCTTTGATCGGAGGTAGTACATCCCCGT 115577
|||| | ||||||| || || | || || ||||| | |||||||||||||| || ||
Sbjct 709107 TCAACGGTGAACTGGATAGG-CGCGGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGT 709165
Query 115578 CTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACT 115637
|||||| || |||||||| | | ||||| || | |||| | || ||
Sbjct 709166 CTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTC 709225
Query 115638 TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCAT 115697
| |||| || ||| | ||||| || |||||||| || ||||| ||||||||
Sbjct 709226 CTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCGGCCGCCAT 709285
Query 115698 ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATC 115757
| | | | | ||| ||||| || || |||| || ||| || || ||
Sbjct 709286 CTGGACGATTTGACGCTGAGAGATCTCCCAGACGGTCTTGTACAGAGCCTTGATGTCCTC 709345
Query 115758 TGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCAT 115814
||||| | ||| || ||||| ||||| || | | |||| | | ||||||
Sbjct 709346 GGGGATGTTGGGGATGTTCTGGATGGAGCCGTT---CTCGGCAATGATGCGGTTCTTCAT 709402
Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAA 115870
| | ||||| || || | | || |||| | | ||| | |||||||
Sbjct 709403 GGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGACAA 709458
Query 115871 CAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGC 115930
| |||||||| || ||| |||| | | |||||||||| ||||| ||||| ||||
Sbjct 709459 CCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGC 709518
Query 115931 ACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGC 115990
| || ||||| |||| ||| || | ||| ||| ||||||||||| || | ||| | ||
Sbjct 709519 ATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACGAGCAAGC 709578
Query 115991 TGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GT-TG 116046
||||||||| ||| | || | || | |||||||||| |||||| || | || |
Sbjct 709579 TGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGG 709638
Query 116047 AGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCC 116106
|| | || | |||||||| ||| |||| ||||| || | || || || ||||||
Sbjct 709639 AG----GGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTGATCCC 709694
Query 116107 TCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCG 116166
| || | || || |||||||||| || || | || | ||||| ||||| ||
Sbjct 709695 TTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAAGCCTCAAGGGCGGCA 709754
Query 116167 TGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG 116226
|| || || ||||| || || | |||| | ||||| || ||||| |
Sbjct 709755 TGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAGGGC 709814
Query 116227 AGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 116285
|||| ||| | | || | || || ||||| || ||||||| ||||| || || ||
Sbjct 709815 AGAC-GCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGTCGGTG 709873
Query 116286 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 116345
| ||| || || || || || || || ||| ||| ||| || | | ||
Sbjct 709874 GCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATGATGCGGTT 709933
Query 116346 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 116405
|| || | ||| ||||| |||| ||| |||||||| | | | || | | |
Sbjct 709934 GAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGCATCCTTC 709993
Query 116406 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465
| | | ||| | || ||||| | || |||| || || |||| ||||||
Sbjct 709994 GTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCAACCTCATC 710053
Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525
|| |||||| || || || || || | || || || || || |||| |||
Sbjct 710054 GGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGTTCCCAGGTT 710113
Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585
||| || || ||| ||| || ||||||||||||||| | || | || |||||
Sbjct 710114 CTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTC 710173
Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATC----GGCGGCTGGCACAGTGGCGTTG 116640
|| || | || || || | | ||| | | || |||| ||| | ||| |
Sbjct 710174 GGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGG---TCTTGCG--G 710228
Query 116641 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTC 116699
| || ||||| |||||||||| ||| || ||||||||||| || || ||| ||
Sbjct 710229 CCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC-GCCGTAGCAGTC 710287
Query 116700 TGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAAC 116756
| || || || || || | || || | ||| | ||| | ||| || ||| ||
Sbjct 710288 AGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAGGTTCTTCTCGAC 710344
Query 116757 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 116816
|||||||||||||| || || ||||| || || ||| || || ||| |||| | ||
Sbjct 710345 ACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGCGAACCTC 710404
Query 116817 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876
|| | || || || || | || | ||||| | || || |||||||| || ||
Sbjct 710405 CTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTC 710464
Query 116877 CAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGC 116930
||||| | || | | || | |||| || |||||| || || | ||
Sbjct 710465 GAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCGCCCTGGTCGACGTATCGAGC 710521
Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990
|| ||| || || || ||||| || || || || | || ||| || || ||
Sbjct 710522 AGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCCGGC 710581
Query 116991 AA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048
|| || ||| | | |||| | || ||||| || || ||||||||| || ||| |
Sbjct 710582 AATGTAGGAGCC--GGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCATC 710639
Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108
|| ||||| || ||| | | ||| || ||||||| || || || ||| ||||
Sbjct 710640 TTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTC 710699
Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGT 117167
| ||| |||||||| |||| || ||| | || |||||||| |||||||||||
Sbjct 710700 ATGTCGACCAGGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCATTGAAGAGGGT 710758
Query 117168 TGGTGTCGCGTGGATGAA 117185
|| | || ||| ||||
Sbjct 710759 GGGGGAGGCATGGGTGAA 710776
Score = 123 bits (136), Expect = 3e-23
Identities = 344/521 (66%), Gaps = 9/521 (2%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| |||||||||||||| |||||||| || || || ||| ||| ||
Sbjct 1551371 GCAAAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 1551312
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||||||||||||||| | |||||| || | ||| | || |||||||||
Sbjct 1551311 GGCATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 1551252
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699
||||| || || || |||| || |||| |||||||||| | ||| | | |
Sbjct 1551251 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATC 1551192
Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759
|| || ||||| | ||||| || ||| || || | ||||| ||||| | |||
Sbjct 1551191 CATCGGATAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAG 1551132
Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817
| || || | | ||| | || |||||||| | || ||||| || || || |
Sbjct 1551131 AGGTAGCTGCGCTGGCTG--TGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCT 1551074
Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876
|| ||| | | | ||| || | ||| | ||||||| |||| || ||| |||
Sbjct 1551073 CGGAGTGTATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATC 1551015
Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936
|| ||||| || || | | ||||| || || || || || | ||
Sbjct 1551014 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCG 1550955
Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993
|| || |||||||| | ||||| | || || | ||||||| || | ||||||
Sbjct 1550954 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 1550895
Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||| || ||||| || || || | |||||| ||||||||
Sbjct 1550894 TCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCA 1550854
>seq4
Length=3617723
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934
||||| |||||| |||||||||||||| | ||| || || || | ||| | | |
Sbjct 945118 ACCGATGGCGTCGATTTCGTCAATGAAGATGATGCAGGGAGCGTTCTTTCGGCCTTCCGC 945059
Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994
|| | |||||||| | | |||||| || |||||||||||||| || | | |
Sbjct 945058 GAACAAGTCTCGCACACGAGAAGGACCGACGCCAACAAACATCTCCACGAACTCAGATCC 944999
Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053
| || | || ||| || ||| ||| || || || |||| ||||||||| ||||
Sbjct 944998 GCTCACGCT-GAAGAAAGGTACGCCGGACTCTCCGGCAGTGGCCTTGGCGAGGAGCGTCT 944940
Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
| || || ||||| || ||||||| |||||| || || ||| |||||||
Sbjct 944939 TTCCTGTTCCTGGAGGGCCGGCGAGAATGGCACCGCGAGGAATCTTGGCACC 944888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507100305080
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