Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 199 5e-46 seq4 91.5 2e-13 >seq7 Length=2761852 Score = 199 bits (220), Expect = 5e-46 Identities = 1079/1698 (64%), Gaps = 59/1698 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTT-GGCCTTTGATCGGAGGTAGTACATCCCCGT 115577 |||| | ||||||| || || | || || ||||| | |||||||||||||| || || Sbjct 709107 TCAACGGTGAACTGGATAGG-CGCGGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGT 709165 Query 115578 CTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACT 115637 |||||| || |||||||| | | ||||| || | |||| | || || Sbjct 709166 CTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTC 709225 Query 115638 TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCAT 115697 | |||| || ||| | ||||| || |||||||| || ||||| |||||||| Sbjct 709226 CTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCGGCCGCCAT 709285 Query 115698 ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATC 115757 | | | | | ||| ||||| || || |||| || ||| || || || Sbjct 709286 CTGGACGATTTGACGCTGAGAGATCTCCCAGACGGTCTTGTACAGAGCCTTGATGTCCTC 709345 Query 115758 TGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCAT 115814 ||||| | ||| || ||||| ||||| || | | |||| | | |||||| Sbjct 709346 GGGGATGTTGGGGATGTTCTGGATGGAGCCGTT---CTCGGCAATGATGCGGTTCTTCAT 709402 Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAA 115870 | | ||||| || || | | || |||| | | ||| | ||||||| Sbjct 709403 GGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGACAA 709458 Query 115871 CAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGC 115930 | |||||||| || ||| |||| | | |||||||||| ||||| ||||| |||| Sbjct 709459 CCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGC 709518 Query 115931 ACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGC 115990 | || ||||| |||| ||| || | ||| ||| ||||||||||| || | ||| | || Sbjct 709519 ATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACGAGCAAGC 709578 Query 115991 TGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GT-TG 116046 ||||||||| ||| | || | || | |||||||||| |||||| || | || | Sbjct 709579 TGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGG 709638 Query 116047 AGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCC 116106 || | || | |||||||| ||| |||| ||||| || | || || || |||||| Sbjct 709639 AG----GGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTGATCCC 709694 Query 116107 TCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCG 116166 | || | || || |||||||||| || || | || | ||||| ||||| || Sbjct 709695 TTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAAGCCTCAAGGGCGGCA 709754 Query 116167 TGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG 116226 || || || ||||| || || | |||| | ||||| || ||||| | Sbjct 709755 TGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAGGGC 709814 Query 116227 AGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 116285 |||| ||| | | || | || || ||||| || ||||||| ||||| || || || Sbjct 709815 AGAC-GCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGTCGGTG 709873 Query 116286 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 116345 | ||| || || || || || || || ||| ||| ||| || | | || Sbjct 709874 GCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATGATGCGGTT 709933 Query 116346 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 116405 || || | ||| ||||| |||| ||| |||||||| | | | || | | | Sbjct 709934 GAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGCATCCTTC 709993 Query 116406 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465 | | | ||| | || ||||| | || |||| || || |||| |||||| Sbjct 709994 GTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCAACCTCATC 710053 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 || |||||| || || || || || | || || || || || |||| ||| Sbjct 710054 GGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGTTCCCAGGTT 710113 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||| || || ||| ||| || ||||||||||||||| | || | || ||||| Sbjct 710114 CTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTC 710173 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATC----GGCGGCTGGCACAGTGGCGTTG 116640 || || | || || || | | ||| | | || |||| ||| | ||| | Sbjct 710174 GGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGG---TCTTGCG--G 710228 Query 116641 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTC 116699 | || ||||| |||||||||| ||| || ||||||||||| || || ||| || Sbjct 710229 CCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC-GCCGTAGCAGTC 710287 Query 116700 TGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAAC 116756 | || || || || || | || || | ||| | ||| | ||| || ||| || Sbjct 710288 AGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAGGTTCTTCTCGAC 710344 Query 116757 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 116816 |||||||||||||| || || ||||| || || ||| || || ||| |||| | || Sbjct 710345 ACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGCGAACCTC 710404 Query 116817 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876 || | || || || || | || | ||||| | || || |||||||| || || Sbjct 710405 CTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTC 710464 Query 116877 CAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGC 116930 ||||| | || | | || | |||| || |||||| || || | || Sbjct 710465 GAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCGCCCTGGTCGACGTATCGAGC 710521 Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990 || ||| || || || ||||| || || || || | || ||| || || || Sbjct 710522 AGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCCGGC 710581 Query 116991 AA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048 || || ||| | | |||| | || ||||| || || ||||||||| || ||| | Sbjct 710582 AATGTAGGAGCC--GGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCATC 710639 Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108 || ||||| || ||| | | ||| || ||||||| || || || ||| |||| Sbjct 710640 TTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTC 710699 Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGT 117167 | ||| |||||||| |||| || ||| | || |||||||| ||||||||||| Sbjct 710700 ATGTCGACCAGGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCAGCATTGAAGAGGGT 710758 Query 117168 TGGTGTCGCGTGGATGAA 117185 || | || ||| |||| Sbjct 710759 GGGGGAGGCATGGGTGAA 710776 Score = 123 bits (136), Expect = 3e-23 Identities = 344/521 (66%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 1551371 GCAAAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 1551312 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||||||||||||||| | |||||| || | ||| | || ||||||||| Sbjct 1551311 GGCATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 1551252 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || |||| || |||| |||||||||| | ||| | | | Sbjct 1551251 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATC 1551192 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 || || ||||| | ||||| || ||| || || | ||||| ||||| | ||| Sbjct 1551191 CATCGGATAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAG 1551132 Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || || | | ||| | || |||||||| | || ||||| || || || | Sbjct 1551131 AGGTAGCTGCGCTGGCTG--TGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCT 1551074 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||| | | | ||| || | ||| | ||||||| |||| || ||| ||| Sbjct 1551073 CGGAGTGTATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATC 1551015 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| || || || || || | || Sbjct 1551014 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCG 1550955 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 1550954 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 1550895 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| || ||||| || || || | |||||| |||||||| Sbjct 1550894 TCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCA 1550854 >seq4 Length=3617723 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||||| |||||| |||||||||||||| | ||| || || || | ||| | | | Sbjct 945118 ACCGATGGCGTCGATTTCGTCAATGAAGATGATGCAGGGAGCGTTCTTTCGGCCTTCCGC 945059 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 || | |||||||| | | |||||| || |||||||||||||| || | | | Sbjct 945058 GAACAAGTCTCGCACACGAGAAGGACCGACGCCAACAAACATCTCCACGAACTCAGATCC 944999 Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | || | || ||| || ||| ||| || || || |||| ||||||||| |||| Sbjct 944998 GCTCACGCT-GAAGAAAGGTACGCCGGACTCTCCGGCAGTGGCCTTGGCGAGGAGCGTCT 944940 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || ||||| || ||||||| |||||| || || ||| ||||||| Sbjct 944939 TTCCTGTTCCTGGAGGGCCGGCGAGAATGGCACCGCGAGGAATCTTGGCACC 944888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507100305080